Result of FASTA (ccds) for
pF1KSDA1960
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1960, 852 aa
1>>>pF1KSDA1960 852 - 852 aa - 852 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0621+/-0.000818; mu= 6.5707+/- 0.049
mean_var=249.3859+/-49.726, 0's: 0 Z-trim(116.2): 23 B-trim: 8 in 1/54
Lambda= 0.081215
statistics sampled from 16833 (16854) to 16833 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.518), width: 16
Scan time: 5.620
The best scores are: opt bits E(32554)
CCDS54902.1 SHROOM1 gene_id:134549|Hs108|chr5 ( 852) 5833 696.8 4.2e-200
CCDS4161.1 SHROOM1 gene_id:134549|Hs108|chr5 ( 847) 5786 691.3 1.9e-198
>>CCDS54902.1 SHROOM1 gene_id:134549|Hs108|chr5 (852 aa)
initn: 5833 init1: 5833 opt: 5833 Z-score: 3705.9 bits: 696.8 E(32554): 4.2e-200
Smith-Waterman score: 5833; 100.0% identity (100.0% similar) in 852 aa overlap (1-852:1-852)
10 20 30 40 50 60
pF1KSD MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD SRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
790 800 810 820 830 840
850
pF1KSD PPVQPPFPLLLT
::::::::::::
CCDS54 PPVQPPFPLLLT
850
>>CCDS4161.1 SHROOM1 gene_id:134549|Hs108|chr5 (847 aa)
initn: 5119 init1: 5119 opt: 5786 Z-score: 3676.2 bits: 691.3 E(32554): 1.9e-198
Smith-Waterman score: 5786; 99.4% identity (99.4% similar) in 852 aa overlap (1-852:1-847)
10 20 30 40 50 60
pF1KSD MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD SRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRA
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS41 SRLARVRRALARAASDSDPDEQ-----RLRLLQRQEEDAKELKEHVARRERAVREVLVRA
730 740 750 760 770
790 800 810 820 830 840
pF1KSD LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
780 790 800 810 820 830
850
pF1KSD PPVQPPFPLLLT
::::::::::::
CCDS41 PPVQPPFPLLLT
840
852 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:49:53 2016 done: Thu Nov 3 07:49:53 2016
Total Scan time: 5.620 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]