Result of FASTA (ccds) for
pF1KSDA1950
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1950, 498 aa
1>>>pF1KSDA1950 498 - 498 aa - 498 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0103+/-0.000718; mu= 16.0577+/- 0.043
mean_var=101.6974+/-20.364, 0's: 0 Z-trim(112.4): 10 B-trim: 0 in 0/53
Lambda= 0.127180
statistics sampled from 13176 (13184) to 13176 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.405), width: 16
Scan time: 3.790
The best scores are: opt bits E(32554)
CCDS34589.1 AMZ1 gene_id:155185|Hs108|chr7 ( 498) 3447 642.7 2.7e-184
CCDS64582.1 AMZ1 gene_id:155185|Hs108|chr7 ( 297) 1373 262.0 6.5e-70
CCDS11674.1 AMZ2 gene_id:51321|Hs108|chr17 ( 360) 728 143.7 3.2e-34
CCDS32714.1 AMZ2 gene_id:51321|Hs108|chr17 ( 302) 475 97.2 2.6e-20
>>CCDS34589.1 AMZ1 gene_id:155185|Hs108|chr7 (498 aa)
initn: 3447 init1: 3447 opt: 3447 Z-score: 3422.2 bits: 642.7 E(32554): 2.7e-184
Smith-Waterman score: 3447; 100.0% identity (100.0% similar) in 498 aa overlap (1-498:1-498)
10 20 30 40 50 60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPLQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPICL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPICL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDSEP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GTSVSEPLTPDAGSHTFASGPEEGLSYLAASEAPLPPGGPAEAIKEHERWLAMCIQALQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GTSVSEPLTPDAGSHTFASGPEEGLSYLAASEAPLPPGGPAEAIKEHERWLAMCIQALQR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD EVAEEDLVQVDRAVDALDRWEMFTGQLPATRQDPPSSRDSVGLRKVLGDKFSSLRRKLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EVAEEDLVQVDRAVDALDRWEMFTGQLPATRQDPPSSRDSVGLRKVLGDKFSSLRRKLSA
430 440 450 460 470 480
490
pF1KSD RKLARAESAPRPWDGEES
::::::::::::::::::
CCDS34 RKLARAESAPRPWDGEES
490
>>CCDS64582.1 AMZ1 gene_id:155185|Hs108|chr7 (297 aa)
initn: 1406 init1: 1361 opt: 1373 Z-score: 1368.7 bits: 262.0 E(32554): 6.5e-70
Smith-Waterman score: 1381; 73.3% identity (78.7% similar) in 315 aa overlap (1-307:1-297)
10 20 30 40 50 60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
130 140 150 160 170 180
190 200 210 220 230
pF1KSD SDLYPHEAWSFTFSKFLPGH-EVGVCSFARFSGEFP-----KSGPSAPDLALVEAAADGP
:::::::::::::::::::: .: ::.: ..: . : . ::: ::
CCDS64 SDLYPHEAWSFTFSKFLPGHGHVPRALPPSGPGELPLAPLPHAGCAQPGRG--PAAAPGP
190 200 210 220 230
240 250 260 270 280 290
pF1KSD EAPLQDRGWALC--FSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRP
. : ... : : :.: : : :: . :. . ::.:.
CCDS64 LSHLPEEA-AACPGFQAHREVP-------ETLHLDSGGGGDVAQPGGGGAVSVGGH----
240 250 260 270 280
300 310 320 330 340 350
pF1KSD LDLCPICLRKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGM
: : :.: :::
CCDS64 ----PACQRRLGHVL
290
>>CCDS11674.1 AMZ2 gene_id:51321|Hs108|chr17 (360 aa)
initn: 654 init1: 300 opt: 728 Z-score: 727.9 bits: 143.7 E(32554): 3.2e-34
Smith-Waterman score: 728; 36.9% identity (68.6% similar) in 309 aa overlap (15-321:9-314)
10 20 30 40 50 60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
..:: ::.: . .: . : .. .:. .. ::..: :: . .
CCDS11 MQIIRHSEQTLKTALISKNPVLVSQY-EKLNAGEQRLMNEAFQPASDLFGPITL
10 20 30 40 50
70 80 90 100 110
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPI-DLSEEPVGSS-LLHQLCS
.. ::. :.::::.::. : .. .. : .. ::.: : .:.. . : .. : .
CCDS11 HSPSDWITSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIGSLGNTRIISEEYIKWLTG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD CTEAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGL
.:.: ::::: : : .. ::: : .... ::.:. ::.:::..:: ::.::.:.
CCDS11 YCKAYFYGLRVKLLEPVPVSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD TLSDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPL
:. ::::...:.:.:.. ::. ::::....: . .. : ..... . .
CCDS11 TMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSS--DYSI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD QDRGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPI
: . .... ... ::. ::. :..:: .:.:: :::::. :.:: ::::.::::
CCDS11 FDNYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPI
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD CLRKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDS
::.::: ..:: ..:::. : :
CCDS11 CLHKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWI
300 310 320 330 340 350
>>CCDS32714.1 AMZ2 gene_id:51321|Hs108|chr17 (302 aa)
initn: 651 init1: 296 opt: 475 Z-score: 478.1 bits: 97.2 E(32554): 2.6e-20
Smith-Waterman score: 521; 31.3% identity (58.0% similar) in 307 aa overlap (15-321:9-256)
10 20 30 40 50 60
pF1KSD MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
..:: ::.: . .: . : .. .:. .. ::..: :: . .
CCDS32 MQIIRHSEQTLKTALISKNPVLVSQY-EKLNAGEQRLMNEAFQPASDLFGPITL
10 20 30 40 50
70 80 90 100 110 120
pF1KSD RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCT
.. ::. :.::::.::. : .. .. : .. ::.: : :.
CCDS32 HSPSDWITSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSI-------GD----------
60 70 80 90
130 140 150 160 170 180
pF1KSD EAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTL
::.:::..:: ::.::.:.:.
CCDS32 ---------------------------------------ILKFLKKKKPEDAFCVVGITM
100 110
190 200 210 220 230 240
pF1KSD SDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPLQD
::::...:.:.:.. ::. ::::....: . .. : ..... . . :
CCDS32 IDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSS--DYSIFD
120 130 140 150 160 170
250 260 270 280 290 300
pF1KSD RGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPICL
. .... ... ::. ::. :..:: .:.:: :::::. :.:: ::::.::::::
CCDS32 NYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICL
180 190 200 210 220 230
310 320 330 340 350 360
pF1KSD RKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDSEP
.::: ..:: ..:::. : :
CCDS32 HKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWIIK
240 250 260 270 280 290
498 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:13:45 2016 done: Thu Nov 3 19:13:46 2016
Total Scan time: 3.790 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]