FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1932, 779 aa
  1>>>pF1KSDA1932 779 - 779 aa - 779 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3920+/-0.000999; mu= -0.2826+/- 0.060
 mean_var=338.8631+/-68.765, 0's: 0 Z-trim(115.0): 9  B-trim: 0 in 0/53
 Lambda= 0.069673
 statistics sampled from 15521 (15526) to 15521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.477), width:  16
 Scan time:  4.630

The best scores are:                                      opt bits E(32554)
CCDS12894.1 LENG8 gene_id:114823|Hs108|chr19       ( 800) 4205 436.9 6.3e-122


>>CCDS12894.1 LENG8 gene_id:114823|Hs108|chr19            (800 aa)
 initn: 4897 init1: 4201 opt: 4205  Z-score: 2302.5  bits: 436.9 E(32554): 6.3e-122
Smith-Waterman score: 4802; 94.1% identity (94.5% similar) in 752 aa overlap (6-718:6-757)

               10        20        30        40        50        60
pF1KSD MAANVGDQRSTDWSSQYSMVAGAGRENGMETPMHENPEWEKARQALASISKSGAAGGSAK
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAANVGDQRSTDWSSQYSMVAGAGRENGMETPMHENPEWEKARQALASISKSGAAGGSAK
               10        20        30        40        50        60

               70        80        90       100                    
pF1KSD SSSNGPVASAQYVSQAEASALQQQQYYQWYQQYNYAYPYSYYYPM---------------
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS12 SSSNGPVASAQYVSQAEASALQQQQYYQWYQQYNYAYPYSYYYPMSMYQSYGSPSQYGMA
               70        80        90       100       110       120

                               110       120       130       140   
pF1KSD ----------------------PPVPGMDESMSYQAPPQQLPSAQPPQPSNPPHGAHTLN
                             ::::::::::::::::::::::::::::::::::::::
CCDS12 GSYGSATPQQPSAPQHQGTLNQPPVPGMDESMSYQAPPQQLPSAQPPQPSNPPHGAHTLN
              130       140       150       160       170       180

           150       160       170       180       190       200   
pF1KSD SGPQPGTAPATQHSQAGPATGQAYGPHTYTEPAKPKKGQQLWNRMKPAPGTGGLKFNIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGPQPGTAPATQHSQAGPATGQAYGPHTYTEPAKPKKGQQLWNRMKPAPGTGGLKFNIQK
              190       200       210       220       230       240

           210       220       230       240       250       260   
pF1KSD RPFAVTTQSFGSNAEGQHSGFGPQPNPEKVQNHSGSSARGNLSGKPDDWPQDMKEYVERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPFAVTTQSFGSNAEGQHSGFGPQPNPEKVQNHSGSSARGNLSGKPDDWPQDMKEYVERC
              250       260       270       280       290       300

           270       280       290       300       310       320   
pF1KSD FTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGLTREPVAESPKKKRWEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGLTREPVAESPKKKRWEAA
              310       320       330       340       350       360

           330       340       350       360       370       380   
pF1KSD SSLHPPRGAGSATRGGGAPSQRGTPGAGGAGRARGNSFTKFGNRNVFMKDNSSSSSTDSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSLHPPRGAGSATRGGGAPSQRGTPGAGGAGRARGNSFTKFGNRNVFMKDNSSSSSTDSR
              370       380       390       400       410       420

           390       400       410       420       430       440   
pF1KSD SRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRG
              430       440       450       460       470       480

           450       460       470       480       490       500   
pF1KSD KRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSSLESSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSSLESSG
              490       500       510       520       530       540

           510       520       530       540       550       560   
pF1KSD ADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKCHWKEKQDYAFAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKCHWKEKQDYAFAC
              550       560       570       580       590       600

           570       580       590       600       610       620   
pF1KSD EQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLPGNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLPGNVG
              610       620       630       640       650       660

           630       640       650       660       670       680   
pF1KSD EFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCH
              670       680       690       700       710       720

           690       700       710         720       730       740 
pF1KSD APCMSGYLVDKFADRERKVALKAMIKTY--VVPSSLLPLLFPSFRLVSSCIKLSPCPLLP
       :::::::::::::::::::::::::::.  ..: : :                       
CCDS12 APCMSGYLVDKFADRERKVALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLAY
              730       740       750       760       770       780

             750       760       770         
pF1KSD LPPVFLLIFFSPFPPSLSAFFPWFSTGKTVPLPPSSAM
                                             
CCDS12 TGPDNSSIDCRLSLAQLSAF                  
              790       800                  




779 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:12:29 2016 done: Thu Nov  3 19:12:30 2016
 Total Scan time:  4.630 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]