Result of FASTA (ccds) for
pF1KSDA1862
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1862, 1030 aa
1>>>pF1KSDA1862 1030 - 1030 aa - 1030 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.1288+/-0.000958; mu= -7.4279+/- 0.058
mean_var=399.6762+/-83.548, 0's: 0 Z-trim(117.7): 52 B-trim: 366 in 2/51
Lambda= 0.064153
statistics sampled from 18459 (18507) to 18459 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.569), width: 16
Scan time: 6.660
The best scores are: opt bits E(32554)
CCDS75674.1 KRBA1 gene_id:84626|Hs108|chr7 (1030) 7383 697.9 2.8e-200
CCDS78285.1 KRBA1 gene_id:84626|Hs108|chr7 (1064) 7366 696.3 8.7e-200
>>CCDS75674.1 KRBA1 gene_id:84626|Hs108|chr7 (1030 aa)
initn: 7383 init1: 7383 opt: 7383 Z-score: 3709.0 bits: 697.9 E(32554): 2.8e-200
Smith-Waterman score: 7383; 99.9% identity (100.0% similar) in 1030 aa overlap (1-1030:1-1030)
10 20 30 40 50 60
pF1KSD MRENYETLVSVGTAELLPLSAFLSPSEPGRAVGGGSHADEGQEPAGCGDPQGGQPRHSLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MRENYETLVSVGTAELLPLSAFLSPSEPGRAVGGGSHADEGQEPAGCGDPQGGQPRHSLH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LTALVQLVKEIPEFLFGEVKGAMDSPESESRGASLDGERASPEAAAAREPCPLRGLLSCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTALVQLVKEIPEFLFGEVKGAMDSPESESRGASLDGERASPEAAAAREPCPLRGLLSCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PDGPTSQPHLATTPTDSSCSSGPTGDGVQGSPLPIKTADKPWPTRKEGPGALGGEPSPPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PDGPTSQPHLATTPTDSSCSSGPTGDGVQGSPLPIKTADKPWPTRKEGPGALGGEPSPPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD HSPSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLPSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HSPSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLPSLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TSRLTRADLGPGSPPWAVKTEAVSGDCPLQGLLHCLKELPEAQDRHPSPSGVGNRRLQEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TSRLTRADLGPGSPPWAVKTEAVSGDCPLQGLLHCLKELPEAQDRHPSPSGVGNRRLQEN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD PGAWKRGSGGPGYLLTPPPHPDLGAGGLLSVKMENSWVQSPPGPASCQPGRQPLSPSATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGAWKRGSGGPGYLLTPPPHPDLGAGGLLSVKMENSWVQSPPGPASCQPGRQPLSPSATG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD DTRGVPQPSWGPEAQAASASSSPLEALEACLKGIPPNGSSPSQLPPTSCSQNPQPGDSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DTRGVPQPSWGPEAQAASASSSPLEALEACLKGIPPNGSSPSQLPPTSCSQNPQPGDSRS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD QKPELQPHRSHSEEATREPVLPLGLQSCVRDGPSRPLAPRGTPTSFSSSSSTDWDLDFGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QKPELQPHRSHSEEATREPVLPLGLQSCVRDGPSRPLAPRGTPTSFSSSSSTDWDLDFGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PVGNQGQHPGKGSPPGSSPLQGLENCLKEIPVPVLRPAWPCSSAADRGPRRAEPRNWTAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PVGNQGQHPGKGSPPGSSPLQGLENCLKEIPVPVLRPAWPCSSAADRGPRRAEPRNWTAD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD KEGLRAEACESARLGQGRGEAPTRSLHLVSPQVFTSSCVPACHQRGFKDPGATRPGVWRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KEGLRAEACESARLGQGRGEAPTRSLHLVSPQVFTSSCVPACHQRGFKDPGATRPGVWRW
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LPEGSAPKPSPLHCLESALRGILPVRPLRFACVGGPSPSPSPGSSSSFSGSEGEDPRPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPEGSAPKPSPLHCLESALRGILPVRPLRFACVGGPSPSPSPGSSSSFSGSEGEDPRPEP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD ELWKPLPQERDRLPSCKPPVPLSPCPGGTPAGSSGGSPGEDPRRTEPRYCSGLGAGTAQD
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DLWKPLPQERDRLPSCKPPVPLSPCPGGTPAGSSGGSPGEDPRRTEPRYCSGLGAGTAQD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD PCPVSQLEKRPRVSEASRGLELGHGRPRVAAKTHERLLPQGPPELPSESPPPELPPPEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PCPVSQLEKRPRVSEASRGLELGHGRPRVAAKTHERLLPQGPPELPSESPPPELPPPEAA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD PPVLPASSLQPPCHCGKPLQQELHSLGAALAEKLDRLATALAGLAQEVATMRTQVNRLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PPVLPASSLQPPCHCGKPLQQELHSLGAALAEKLDRLATALAGLAQEVATMRTQVNRLGR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD RPQGPGPMGQASWMWTLPRGPRWAHGPGHRHLPYWRQKGPTRPKPKILRGQGESCRAGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RPQGPGPMGQASWMWTLPRGPRWAHGPGHRHLPYWRQKGPTRPKPKILRGQGESCRAGDL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD QGLSRGTARRARPLPPDAPPAEPPGLHCSSSQQLLSSTPSCHAAPPAHPLLAHTGGHQSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QGLSRGTARRARPLPPDAPPAEPPGLHCSSSQQLLSSTPSCHAAPPAHPLLAHTGGHQSP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD LPPLVPAALPLQGASPPAASADADVPTSGVAPDGIPERPKEPSSLLGGVQRALQEELWGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPPLVPAALPLQGASPPAASADADVPTSGVAPDGIPERPKEPSSLLGGVQRALQEELWGG
970 980 990 1000 1010 1020
1030
pF1KSD EHRDPRWGAH
::::::::::
CCDS75 EHRDPRWGAH
1030
>>CCDS78285.1 KRBA1 gene_id:84626|Hs108|chr7 (1064 aa)
initn: 6690 init1: 6690 opt: 7366 Z-score: 3700.3 bits: 696.3 E(32554): 8.7e-200
Smith-Waterman score: 7366; 99.8% identity (99.9% similar) in 1030 aa overlap (1-1030:36-1064)
10 20 30
pF1KSD MRENYETLVSVGTAELLPLSAFLSPSEPGR
::::::::::::::::::::::::::::::
CCDS78 SITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVSVGTAELLPLSAFLSPSEPGR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KSD AVGGGSHADEGQEPAGCGDPQGGQPRHSLHLTALVQLVKEIPEFLFGEVKGAMDSPESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AVGGGSHADEGQEPAGCGDPQGGQPRHSLHLTALVQLVKEIPEFLFGEVKGAMDSPESES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KSD RGASLDGERASPEAAAAREPCPLRGLLSCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQG
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS78 RGASLDGERASPEAAA-REPCPLRGLLSCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KSD SPLPIKTADKPWPTRKEGPGALGGEPSPPTHSPSRRKSHRGQERGTSEAGISPGNSPLQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SPLPIKTADKPWPTRKEGPGALGGEPSPPTHSPSRRKSHRGQERGTSEAGISPGNSPLQG
190 200 210 220 230 240
220 230 240 250 260 270
pF1KSD LINCLKEILVPGPRHPETSPSFLPPLPSLGTSRLTRADLGPGSPPWAVKTEAVSGDCPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LINCLKEILVPGPRHPETSPSFLPPLPSLGTSRLTRADLGPGSPPWAVKTEAVSGDCPLQ
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD GLLHCLKELPEAQDRHPSPSGVGNRRLQENPGAWKRGSGGPGYLLTPPPHPDLGAGGLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GLLHCLKELPEAQDRHPSPSGVGNRRLQENPGAWKRGSGGPGYLLTPPPHPDLGAGGLLS
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD VKMENSWVQSPPGPASCQPGRQPLSPSATGDTRGVPQPSWGPEAQAASASSSPLEALEAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VKMENSWVQSPPGPASCQPGRQPLSPSATGDTRGVPQPSWGPEAQAASASSSPLEALEAC
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD LKGIPPNGSSPSQLPPTSCSQNPQPGDSRSQKPELQPHRSHSEEATREPVLPLGLQSCVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LKGIPPNGSSPSQLPPTSCSQNPQPGDSRSQKPELQPHRSHSEEATREPVLPLGLQSCVR
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD DGPSRPLAPRGTPTSFSSSSSTDWDLDFGSPVGNQGQHPGKGSPPGSSPLQGLENCLKEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DGPSRPLAPRGTPTSFSSSSSTDWDLDFGSPVGNQGQHPGKGSPPGSSPLQGLENCLKEI
490 500 510 520 530 540
520 530 540 550 560 570
pF1KSD PVPVLRPAWPCSSAADRGPRRAEPRNWTADKEGLRAEACESARLGQGRGEAPTRSLHLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PVPVLRPAWPCSSAADRGPRRAEPRNWTADKEGLRAEACESARLGQGRGEAPTRSLHLVS
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD PQVFTSSCVPACHQRGFKDPGATRPGVWRWLPEGSAPKPSPLHCLESALRGILPVRPLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PQVFTSSCVPACHQRGFKDPGATRPGVWRWLPEGSAPKPSPLHCLESALRGILPVRPLRF
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD ACVGGPSPSPSPGSSSSFSGSEGEDPRPEPELWKPLPQERDRLPSCKPPVPLSPCPGGTP
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS78 ACVGGPSPSPSPGSSSSFSGSEGEDPRPEPDLWKPLPQERDRLPSCKPPVPLSPCPGGTP
670 680 690 700 710 720
700 710 720 730 740 750
pF1KSD AGSSGGSPGEDPRRTEPRYCSGLGAGTAQDPCPVSQLEKRPRVSEASRGLELGHGRPRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AGSSGGSPGEDPRRTEPRYCSGLGAGTAQDPCPVSQLEKRPRVSEASRGLELGHGRPRVA
730 740 750 760 770 780
760 770 780 790 800 810
pF1KSD AKTHERLLPQGPPELPSESPPPELPPPEAAPPVLPASSLQPPCHCGKPLQQELHSLGAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AKTHERLLPQGPPELPSESPPPELPPPEAAPPVLPASSLQPPCHCGKPLQQELHSLGAAL
790 800 810 820 830 840
820 830 840 850 860 870
pF1KSD AEKLDRLATALAGLAQEVATMRTQVNRLGRRPQGPGPMGQASWMWTLPRGPRWAHGPGHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AEKLDRLATALAGLAQEVATMRTQVNRLGRRPQGPGPMGQASWMWTLPRGPRWAHGPGHR
850 860 870 880 890 900
880 890 900 910 920 930
pF1KSD HLPYWRQKGPTRPKPKILRGQGESCRAGDLQGLSRGTARRARPLPPDAPPAEPPGLHCSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 HLPYWRQKGPTRPKPKILRGQGESCRAGDLQGLSRGTARRARPLPPDAPPAEPPGLHCSS
910 920 930 940 950 960
940 950 960 970 980 990
pF1KSD SQQLLSSTPSCHAAPPAHPLLAHTGGHQSPLPPLVPAALPLQGASPPAASADADVPTSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SQQLLSSTPSCHAAPPAHPLLAHTGGHQSPLPPLVPAALPLQGASPPAASADADVPTSGV
970 980 990 1000 1010 1020
1000 1010 1020 1030
pF1KSD APDGIPERPKEPSSLLGGVQRALQEELWGGEHRDPRWGAH
::::::::::::::::::::::::::::::::::::::::
CCDS78 APDGIPERPKEPSSLLGGVQRALQEELWGGEHRDPRWGAH
1030 1040 1050 1060
1030 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:32:45 2016 done: Thu Nov 3 07:32:46 2016
Total Scan time: 6.660 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]