FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1817, 866 aa
  1>>>pF1KSDA1817 866 - 866 aa - 866 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1266+/-0.00103; mu= -0.2210+/- 0.062
 mean_var=261.8627+/-50.463, 0's: 0 Z-trim(112.8): 54  B-trim: 0 in 0/52
 Lambda= 0.079257
 statistics sampled from 13507 (13548) to 13507 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.416), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS76006.1 FRMPD3 gene_id:84443|Hs108|chrX        (1810) 5686 664.2 5.9e-190


>>CCDS76006.1 FRMPD3 gene_id:84443|Hs108|chrX             (1810 aa)
 initn: 5686 init1: 5686 opt: 5686  Z-score: 3523.8  bits: 664.2 E(32554): 5.9e-190
Smith-Waterman score: 5686; 100.0% identity (100.0% similar) in 866 aa overlap (1-866:945-1810)

                                             10        20        30
pF1KSD                               MSLRAATSSLSEEQVSELRDNLPKEVRLSP
                                     ::::::::::::::::::::::::::::::
CCDS76 SPQLSEQKNLSLLSPVPEDKGPGHTRAGLEMSLRAATSSLSEEQVSELRDNLPKEVRLSP
          920       930       940       950       960       970    

               40        50        60        70        80        90
pF1KSD KLILDPKSSVTPAIISAALQQVVHNKSLVTAGGALGNPPSRGERRLEASMGRPEVSMMSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KLILDPKSSVTPAIISAALQQVVHNKSLVTAGGALGNPPSRGERRLEASMGRPEVSMMSS
          980       990      1000      1010      1020      1030    

              100       110       120       130       140       150
pF1KSD SASKNLKFKISPSAPETSWNSQHQLGAEVSSSPRAPTGSRADSLHLSQQEDSLPVQNFPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SASKNLKFKISPSAPETSWNSQHQLGAEVSSSPRAPTGSRADSLHLSQQEDSLPVQNFPP
         1040      1050      1060      1070      1080      1090    

              160       170       180       190       200       210
pF1KSD KSYLLRTSRESVGKQATGEVAGKGGPVGGKPTLQKQGTISSQGEKAQLESTPKRSKLEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KSYLLRTSRESVGKQATGEVAGKGGPVGGKPTLQKQGTISSQGEKAQLESTPKRSKLEET
         1100      1110      1120      1130      1140      1150    

              220       230       240       250       260       270
pF1KSD SLVPRATYPMALQSPSCQSRSHSPSCQPHGHSPSSQSRGQSPSCQPRGQSPLRSQAASRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SLVPRATYPMALQSPSCQSRSHSPSCQPHGHSPSSQSRGQSPSCQPRGQSPLRSQAASRQ
         1160      1170      1180      1190      1200      1210    

              280       290       300       310       320       330
pF1KSD VSTMPSRKLETTLNGAHSTSEGPAKPKSSRGPFRLRNLFSATFPTRQKKETDERQAQLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VSTMPSRKLETTLNGAHSTSEGPAKPKSSRGPFRLRNLFSATFPTRQKKETDERQAQLQK
         1220      1230      1240      1250      1260      1270    

              340       350       360       370       380       390
pF1KSD VKQYELEFLEELLKPPSQGELPGTEYLQPPAPGRCSCQLRSSPVQQGPGMSREQRRSCDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VKQYELEFLEELLKPPSQGELPGTEYLQPPAPGRCSCQLRSSPVQQGPGMSREQRRSCDC
         1280      1290      1300      1310      1320      1330    

              400       410       420       430       440       450
pF1KSD KRICRGGRPQATQTPVPSLRGRERDRVLPSQRQPEAGPGVSLSSPINVQRIRSTSLESRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KRICRGGRPQATQTPVPSLRGRERDRVLPSQRQPEAGPGVSLSSPINVQRIRSTSLESRE
         1340      1350      1360      1370      1380      1390    

              460       470       480       490       500       510
pF1KSD CRSDPESGVSCLTTCASGGECLGAPNYRKLMRRYSISELDQGDRASLTSDVYPHPPLGML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 CRSDPESGVSCLTTCASGGECLGAPNYRKLMRRYSISELDQGDRASLTSDVYPHPPLGML
         1400      1410      1420      1430      1440      1450    

              520       530       540       550       560       570
pF1KSD PREAKEVEASLPIALGPKSRSLESPTLGDPSYVQVAPETKGPRQMAVFSLPEEVYRKPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PREAKEVEASLPIALGPKSRSLESPTLGDPSYVQVAPETKGPRQMAVFSLPEEVYRKPAE
         1460      1470      1480      1490      1500      1510    

              580       590       600       610       620       630
pF1KSD LDEDSESSKCCSIRYCFYYRKCDMADDASDGKDELSYSIPMKILPGMKLDEQVVPVVSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LDEDSESSKCCSIRYCFYYRKCDMADDASDGKDELSYSIPMKILPGMKLDEQVVPVVSRT
         1520      1530      1540      1550      1560      1570    

              640       650       660       670       680       690
pF1KSD LQVLDAATCSSSSPEASRTQEIDLRVSTFEGSLAKINALRAHAYGLPDGFLAARLDTNEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LQVLDAATCSSSSPEASRTQEIDLRVSTFEGSLAKINALRAHAYGLPDGFLAARLDTNEL
         1580      1590      1600      1610      1620      1630    

              700       710       720       730       740       750
pF1KSD LTVLRQCVASPEARAPKPYVSQISEYKLELALKFKELRASCRRVANVDKSPTHMLAAITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LTVLRQCVASPEARAPKPYVSQISEYKLELALKFKELRASCRRVANVDKSPTHMLAAITG
         1640      1650      1660      1670      1680      1690    

              760       770       780       790       800       810
pF1KSD SFQVLSSLIETFVRLVFIVRSEAQRQELLAKVEEVVRNYTFLLRAAEESTARNLNQQQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SFQVLSSLIETFVRLVFIVRSEAQRQELLAKVEEVVRNYTFLLRAAEESTARNLNQQQQQ
         1700      1710      1720      1730      1740      1750    

              820       830       840       850       860      
pF1KSD QQQQQQQQQQQQQQQQQQQQQQVAAAAGAATEHPPGSPTSATVMSTFTHSLKTLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QQQQQQQQQQQQQQQQQQQQQQVAAAAGAATEHPPGSPTSATVMSTFTHSLKTLIK
         1760      1770      1780      1790      1800      1810




866 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:26:12 2016 done: Thu Nov  3 07:26:12 2016
 Total Scan time:  3.550 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]