FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1802, 812 aa
  1>>>pF1KSDA1802 812 - 812 aa - 812 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 19.5856+/-0.00128; mu= -43.8432+/- 0.077
 mean_var=911.3412+/-198.157, 0's: 0 Z-trim(117.2): 61  B-trim: 0 in 0/53
 Lambda= 0.042485
 statistics sampled from 17914 (17964) to 17914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.552), width:  16
 Scan time:  5.130

The best scores are:                                      opt bits E(32554)
CCDS9545.1 CHAMP1 gene_id:283489|Hs108|chr13       ( 812) 5689 364.4 4.5e-100


>>CCDS9545.1 CHAMP1 gene_id:283489|Hs108|chr13            (812 aa)
 initn: 5689 init1: 5689 opt: 5689  Z-score: 1910.2  bits: 364.4 E(32554): 4.5e-100
Smith-Waterman score: 5689; 100.0% identity (100.0% similar) in 812 aa overlap (1-812:1-812)

               10        20        30        40        50        60
pF1KSD MEAFQELRKPSARLECDHCSFRGTDYENVQIHMGTIHPEFCDEMDAGGLGKMIFYQKSAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MEAFQELRKPSARLECDHCSFRGTDYENVQIHMGTIHPEFCDEMDAGGLGKMIFYQKSAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LFHCHKCFFTSKMYSNVYYHITSKHASPDKWNDKPKNQLNKETDPVKSPPLPEHQKIPCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LFHCHKCFFTSKMYSNVYYHITSKHASPDKWNDKPKNQLNKETDPVKSPPLPEHQKIPCN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SAEPKSIPALSMETQKLGSVLSPESPKPTPLTPLEPQKPGSVVSPELQTPLPSPEPSKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 SAEPKSIPALSMETQKLGSVLSPESPKPTPLTPLEPQKPGSVVSPELQTPLPSPEPSKPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SVSSPEPPKSVPVCESQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 SVSSPEPPKSVPVCESQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 SASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PTPSVSSASWKSSSVSPSSWKSPPASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PTPSVSSASWKSSSVSPSSWKSPPASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPELR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KPGPPLSPEIRSPAGSPELRKPSGSPDLWKLSPDQRKTSPASLDFPESQKSSRGGSPDLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KPGPPLSPEIRSPAGSPELRKPSGSPDLWKLSPDQRKTSPASLDFPESQKSSRGGSPDLW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD KSSFFIEPQKPVFPETRKPGPSGPSESPKAASDIWKPVLSIDTEPRKPALFPEPAKTAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KSSFFIEPQKPVFPETRKPGPSGPSESPKAASDIWKPVLSIDTEPRKPALFPEPAKTAPP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ASPEARKRALFPEPRKHALFPELPKSALFSESQKAVELGDELQIDAIDDQKCDILVQEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ASPEARKRALFPEPRKHALFPELPKSALFSESQKAVELGDELQIDAIDDQKCDILVQEEL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LASPKKLLEDTLFPSSKKLKKDNQESSDAELSSSEYIKTDLDAMDIKGQESSSDQEQVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LASPKKLLEDTLFPSSKKLKKDNQESSDAELSSSEYIKTDLDAMDIKGQESSSDQEQVDV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD ESIDFSKENKMDMTSPEQSRNVLQFTEEKEAFISEEEIAKYMKRGKGKYYCKICCCRAMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ESIDFSKENKMDMTSPEQSRNVLQFTEEKEAFISEEEIAKYMKRGKGKYYCKICCCRAMK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KGAVLHHLVNKHNVHSPYKCTICGKAFLLESLLKNHVAAHGQSLLKCPRCNFESNFPRGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KGAVLHHLVNKHNVHSPYKCTICGKAFLLESLLKNHVAAHGQSLLKCPRCNFESNFPRGF
              730       740       750       760       770       780

              790       800       810  
pF1KSD KKHLTHCQSRHNEEANKKLMEALEPPLEEQQI
       ::::::::::::::::::::::::::::::::
CCDS95 KKHLTHCQSRHNEEANKKLMEALEPPLEEQQI
              790       800       810  




812 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:23:36 2016 done: Thu Nov  3 07:23:37 2016
 Total Scan time:  5.130 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]