FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1792, 764 aa
  1>>>pF1KSDA1792 764 - 764 aa - 764 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7774+/-0.00106; mu= 17.1885+/- 0.064
 mean_var=66.3534+/-13.367, 0's: 0 Z-trim(102.8): 33  B-trim: 9 in 2/49
 Lambda= 0.157450
 statistics sampled from 7097 (7110) to 7097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.218), width:  16
 Scan time:  3.650

The best scores are:                                      opt bits E(32554)
CCDS13048.1 FASTKD5 gene_id:60493|Hs108|chr20      ( 764) 5063 1159.6       0
CCDS3873.1 FASTKD3 gene_id:79072|Hs108|chr5        ( 662)  299 77.5 7.9e-14


>>CCDS13048.1 FASTKD5 gene_id:60493|Hs108|chr20           (764 aa)
 initn: 5063 init1: 5063 opt: 5063  Z-score: 6209.2  bits: 1159.6 E(32554):    0
Smith-Waterman score: 5063; 100.0% identity (100.0% similar) in 764 aa overlap (1-764:1-764)

               10        20        30        40        50        60
pF1KSD MAATLKSLKLVRYRAFCSPSAFGAVRSVSYWNVSSTQHGGQDPPEHISLCHSAKKVKNIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAATLKSLKLVRYRAFCSPSAFGAVRSVSYWNVSSTQHGGQDPPEHISLCHSAKKVKNIC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD STFSSRRILTTSSAHPGLEFSKTSSSKASTLQLGSPRATGVDEEDVEVFDSFENMRVFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 STFSSRRILTTSSAHPGLEFSKTSSSKASTLQLGSPRATGVDEEDVEVFDSFENMRVFLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LRPEYRVHSYNASETSQLLSVSEGELILHKVRVNQNNLQAQVIVDYLCKLSSLPAEQHPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRPEYRVHSYNASETSQLLSVSEGELILHKVRVNQNNLQAQVIVDYLCKLSSLPAEQHPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLGSTSFALLCQLSVKKIQLFDTQDLINVLKAFVILGIPHSHSMLDVYETKCCHQVWEMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLGSTSFALLCQLSVKKIQLFDTQDLINVLKAFVILGIPHSHSMLDVYETKCCHQVWEMN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD MDQLLLVADLWRYLGRKVPRFLNIFSSYLNLHWKDLSLSQLVHLIYVIGENRQVSQDLMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDQLLLVADLWRYLGRKVPRFLNIFSSYLNLHWKDLSLSQLVHLIYVIGENRQVSQDLMQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KLESLILKYIDLINLEEVGTICLGFFKSSTNLSEFVMRKIGDLACANIQHLSSRSLVNIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLESLILKYIDLINLEEVGTICLGFFKSSTNLSEFVMRKIGDLACANIQHLSSRSLVNIV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KMFRFTHVDHINFMKQIGEIAPQRIPSLGVQGVMHLTLYCSALRFLNEGVMNAVAASLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KMFRFTHVDHINFMKQIGEIAPQRIPSLGVQGVMHLTLYCSALRFLNEGVMNAVAASLPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RVAHCRSKDVAKILWSFGTLNYKPPNAEEFYSSLISEIHRKMPEFNQYPEHLPTCLLGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVAHCRSKDVAKILWSFGTLNYKPPNAEEFYSSLISEIHRKMPEFNQYPEHLPTCLLGLA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD FLEYFPVELIDFALSPGFVRLAQERTKFDLLKELYTLDGTVGIECPDYRGNRLSTHLQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLEYFPVELIDFALSPGFVRLAQERTKFDLLKELYTLDGTVGIECPDYRGNRLSTHLQQE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD GSELLWYLAEKDMNSKPEFLETVFLLETMLGGPQYVKHHMILPHTRSSDLEVQLDVNLKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GSELLWYLAEKDMNSKPEFLETVFLLETMLGGPQYVKHHMILPHTRSSDLEVQLDVNLKP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LPFNREATPAENVAKLRLEHVGVSLTDDLMNKLLKGKARGHFQGKTESEPGQQPMELENK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LPFNREATPAENVAKLRLEHVGVSLTDDLMNKLLKGKARGHFQGKTESEPGQQPMELENK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD AAVPLGGFLCNVADKSGAMEMAGLCPAACMQTPRMKLAVQFTNRNQYCYGSRDLLGLHNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAVPLGGFLCNVADKSGAMEMAGLCPAACMQTPRMKLAVQFTNRNQYCYGSRDLLGLHNM
              670       680       690       700       710       720

              730       740       750       760    
pF1KSD KRRQLARLGYRVVELSYWEWLPLLKRTRLEKLAFLHEKVFTSAL
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRRQLARLGYRVVELSYWEWLPLLKRTRLEKLAFLHEKVFTSAL
              730       740       750       760    

>>CCDS3873.1 FASTKD3 gene_id:79072|Hs108|chr5             (662 aa)
 initn: 219 init1: 122 opt: 299  Z-score: 361.8  bits: 77.5 E(32554): 7.9e-14
Smith-Waterman score: 301; 21.0% identity (55.6% similar) in 523 aa overlap (117-615:80-589)

         90       100       110       120       130            140 
pF1KSD KASTLQLGSPRATGVDEEDVEVFDSFENMRVFLQLRPEYRVHSYNASETSQLL-----SV
                                     :: :.    :...   .: ::..     ..
CCDS38 PEPFGVKFHHAHCKKFHSKNGNDLHPLGGPVFSQVSDCDRLEQNVKNEESQMFYRRLSNL
      50        60        70        80        90       100         

             150         160       170        180        190       
pF1KSD SEGELILHKVRVNQN--NLQAQVIVDYLCKLSSLPAEQH-PV-LLGSTSFALLC-QLSVK
       . .: .:  . . ..  . .:   .. .:.. .  ..:  :  .: .. :  :: :.  .
CCDS38 TSSEEVLSFISTMETLPDTMAAGALQRICEVEKKDGDQGLPKEILENSIFQALCFQFEKE
     110       120       130       140       150       160         

        200       210       220       230       240         250    
pF1KSD KIQLFDTQDLINVLKAFVILGIPHSHSMLDVYETKCCHQVWEMNMD--QLLLVADLWRYL
         :: .:. :...:.:...: .  . :.:    ..: ... . .:.  .: ....    :
CCDS38 PSQLSNTS-LVTALQALILLHVDPQSSLLLNLVAECQNRLRKGGMEVRNLCILGESLITL
     170        180       190       200       210       220        

          260       270        280          290       300       310
pF1KSD GRKVPRFLNIFSSYLN-LHWKDLSLSQLVHLIYVIG---ENRQVSQDLMQKLESLILKYI
         .    :... . :.  . . ..  ..: :  ..    :. .  : ...:.... :. .
CCDS38 HSSGCVTLELIINQLQGEKLETFTPEDIVALYRILQACTEKVDEHQTFLNKINNFSLSIV
      230       240       250       260       270       280        

              320       330       340       350       360          
pF1KSD DLINLEEVGTICLGFFKSSTNLSEFVMRKIGDLACANIQHLSSRSLVNIVKMF-RFTHVD
       . .. . .. .  ..   . . .  .. :.:  .  .. :.... :  ... :  : : :
CCDS38 SNLSPKLISQMLTALVVLDQSQAFPLIIKLGKYVVRHVPHFTNEELRRVLEAFIYFGHHD
      290       300       310       320       330       340        

     370       380       390       400       410       420         
pF1KSD HINFMKQIGEIAPQRIPSLGVQGVMHLTLYCSALRFLNEGVMNAVAASLPPRVAHCRSKD
        . : : . . .     .:  . : ..  :::   .:.. ..:::: ..  .. .   ..
CCDS38 TF-FTKALEHRVAAVCLTLDPEVVCRVMEYCSRELILSKPILNAVAETFVCQTEKFSPRQ
      350        360       370       380       390       400       

     430       440       450       460       470           480     
pF1KSD VAKILWSFGTLNYKPPNAEEFYSSLISEIHRKMPEFNQYPEHLPTCLLGL----AFLEYF
       .. ..  :: ::: ::::  .. .: . .   . .:: .:   :  :: :    .. :  
CCDS38 ISALMEPFGKLNYLPPNASALFRKLENVL---FTHFNYFP---PKSLLKLLHSCSLNECH
       410       420       430          440          450       460 

         490        500       510         520       530       540  
pF1KSD PVELIDFALSPGFV-RLAQERTKFDLLK--ELYTLDGTVGIECPDYRGNRLSTHLQQEGS
       ::...   ..: :. ::  .....: :.  .:  :  .  .::: :.: .:  . : .. 
CCDS38 PVNFLAKIFKPLFLQRLQGKESHLDTLSRAQLTQLFLASVLECPFYKGPKLLPKYQVKSF
             470       480       490       500       510       520 

            550       560       570       580       590       600  
pF1KSD ELLWYLAEKDMNSKPEFLETVFLLETMLGGPQYVKHHMILPHTRSSDLEVQLDVNLKPLP
              :  ..:.  .  . . : ..::.  :   ... :.  . :.:..:: .   ::
CCDS38 LTPCCSLETPVDSQ-LYRYVKIGLTNLLGARLYFAPKVLTPYCYTIDVEIKLDEEGFVLP
             530        540       550       560       570       580

            610       620       630       640       650       660  
pF1KSD FNREATPAENVAKLRLEHVGVSLTDDLMNKLLKGKARGHFQGKTESEPGQQPMELENKAA
           .:  :.. :                                               
CCDS38 ----STANEDIHKRIALCIDGPKRFCSNSKHLLGKEAIKQRHLQLLGYQVVQIPYHEIGM
                  590       600       610       620       630      




764 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:21:41 2016 done: Thu Nov  3 07:21:42 2016
 Total Scan time:  3.650 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]