FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1737, 399 aa
  1>>>pF1KSDA1737 399 - 399 aa - 399 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6711+/-0.000357; mu= -7.4881+/- 0.022
 mean_var=241.5967+/-49.337, 0's: 0 Z-trim(122.1): 9  B-trim: 934 in 1/60
 Lambda= 0.082514
 statistics sampled from 39709 (39719) to 39709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.466), width:  16
 Scan time:  9.820

The best scores are:                                      opt bits E(85289)
NP_219494 (OMIM: 616995) CLOCK-interacting pacemak ( 399) 2608 323.0 8.2e-88


>>NP_219494 (OMIM: 616995) CLOCK-interacting pacemaker [  (399 aa)
 initn: 2608 init1: 2608 opt: 2608  Z-score: 1697.5  bits: 323.0 E(85289): 8.2e-88
Smith-Waterman score: 2608; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KSD MERKNPSRESPRRLSAKVGKGTEMKKVARQLGMAAAESDKDSGFSDGSSECLSSAEQMES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 MERKNPSRESPRRLSAKVGKGTEMKKVARQLGMAAAESDKDSGFSDGSSECLSSAEQMES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EDMLSALGWSREDRPRQNSKTAKNAFPTLSPMVVMKNVLVKQGSSSSQLQSWTVQPSFEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 EDMLSALGWSREDRPRQNSKTAKNAFPTLSPMVVMKNVLVKQGSSSSQLQSWTVQPSFEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ISAQPQLLFLHPPVPSPVSPCHTGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLGPEEKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 ISAQPQLLFLHPPVPSPVSPCHTGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLGPEEKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TSGVQKKICTERLGPSLSSSEPTKAGAVPSSPSTPAPPSAKLAEDSALQGVPSLVAGGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 TSGVQKKICTERLGPSLSSSEPTKAGAVPSSPSTPAPPSAKLAEDSALQGVPSLVAGGSP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGLESNSPLSPLSANYSSPLWAAEHLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 QTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGLESNSPLSPLSANYSSPLWAAEHLC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RSPDIFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLKEQTQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 RSPDIFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLKEQTQLF
              310       320       330       340       350       360

              370       380       390         
pF1KSD IEATKSRAPQAWAKLQASLTPGSSNTGSDLEAFSDHPAI
       :::::::::::::::::::::::::::::::::::::::
NP_219 IEATKSRAPQAWAKLQASLTPGSSNTGSDLEAFSDHPAI
              370       380       390         




399 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:11:29 2016 done: Thu Nov  3 07:11:31 2016
 Total Scan time:  9.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]