FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1737, 399 aa
  1>>>pF1KSDA1737 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9333+/-0.000896; mu= -3.3317+/- 0.054
 mean_var=218.6812+/-45.099, 0's: 0 Z-trim(114.1): 5  B-trim: 226 in 1/52
 Lambda= 0.086730
 statistics sampled from 14694 (14697) to 14694 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.451), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS9855.1 CIPC gene_id:85457|Hs108|chr14          ( 399) 2608 338.6 6.3e-93


>>CCDS9855.1 CIPC gene_id:85457|Hs108|chr14               (399 aa)
 initn: 2608 init1: 2608 opt: 2608  Z-score: 1781.8  bits: 338.6 E(32554): 6.3e-93
Smith-Waterman score: 2608; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KSD MERKNPSRESPRRLSAKVGKGTEMKKVARQLGMAAAESDKDSGFSDGSSECLSSAEQMES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MERKNPSRESPRRLSAKVGKGTEMKKVARQLGMAAAESDKDSGFSDGSSECLSSAEQMES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EDMLSALGWSREDRPRQNSKTAKNAFPTLSPMVVMKNVLVKQGSSSSQLQSWTVQPSFEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 EDMLSALGWSREDRPRQNSKTAKNAFPTLSPMVVMKNVLVKQGSSSSQLQSWTVQPSFEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ISAQPQLLFLHPPVPSPVSPCHTGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLGPEEKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ISAQPQLLFLHPPVPSPVSPCHTGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLGPEEKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TSGVQKKICTERLGPSLSSSEPTKAGAVPSSPSTPAPPSAKLAEDSALQGVPSLVAGGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TSGVQKKICTERLGPSLSSSEPTKAGAVPSSPSTPAPPSAKLAEDSALQGVPSLVAGGSP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGLESNSPLSPLSANYSSPLWAAEHLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 QTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGLESNSPLSPLSANYSSPLWAAEHLC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RSPDIFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLKEQTQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 RSPDIFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLKEQTQLF
              310       320       330       340       350       360

              370       380       390         
pF1KSD IEATKSRAPQAWAKLQASLTPGSSNTGSDLEAFSDHPAI
       :::::::::::::::::::::::::::::::::::::::
CCDS98 IEATKSRAPQAWAKLQASLTPGSSNTGSDLEAFSDHPAI
              370       380       390         




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:11:29 2016 done: Thu Nov  3 07:11:29 2016
 Total Scan time:  3.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]