Result of FASTA (ccds) for
pF1KSDA1734
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1734, 1292 aa
1>>>pF1KSDA1734 1292 - 1292 aa - 1292 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7985+/-0.00101; mu= 9.8011+/- 0.062
mean_var=248.3605+/-49.786, 0's: 0 Z-trim(113.4): 31 B-trim: 565 in 1/55
Lambda= 0.081383
statistics sampled from 13984 (14006) to 13984 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.43), width: 16
Scan time: 3.140
The best scores are: opt bits E(32554)
CCDS32742.1 UBE2O gene_id:63893|Hs108|chr17 (1292) 8714 1037.3 0
CCDS33175.2 BIRC6 gene_id:57448|Hs108|chr2 (4857) 504 73.9 1.2e-11
>>CCDS32742.1 UBE2O gene_id:63893|Hs108|chr17 (1292 aa)
initn: 8714 init1: 8714 opt: 8714 Z-score: 5539.7 bits: 1037.3 E(32554): 0
Smith-Waterman score: 8714; 99.8% identity (99.9% similar) in 1292 aa overlap (1-1292:1-1292)
10 20 30 40 50 60
pF1KSD MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDFGPEAGSQRLL
::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS32 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQRLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FSHDLVSGRYRGSVHFGLVRLIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGRASPLRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FSHDLVSGRYRGSVHFGLVRLIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGRASPLRRG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD YVRVQWYPEGVKQHVKETKLKLEDRSVVPRDVVRHMRSTDSQCGTVIDVNIDCAVKLIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YVRVQWYPEGVKQHVKETKLKLEDRSVVPRDVVRHMRSTDSQCGTVIDVNIDCAVKLIGT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VVELKVTWITKSFCPGGTDSVSPPPSVITQENLGRVKRLGCFDHAQRQLGERCLYVFPAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VVELKVTWITKSFCPGGTDSVSPPPSVITQENLGRVKRLGCFDHAQRQLGERCLYVFPAK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD VEPAKIAWECPEKNCAQGEGSMAKKVKRLLKKQVVRIMSCSPDTQCSRDHSMEDPDKKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VEPAKIAWECPEKNCAQGEGSMAKKVKRLLKKQVVRIMSCSPDTQCSRDHSMEDPDKKGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRLHSAEQDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRLHSAEQDA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DDEAADDTDDTSSVTSSASSTTSSQSGSGTSRKKSIPLSIKNLKRKHKRKKNKITRDFKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DDEAADDTDDTSSVTSSASSTTSSQSGSGTSRKKSIPLSIKNLKRKHKRKKNKITRDFKP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQSCPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQSCPD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD PAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGEEEDVSVYDIADHPDFRFRTTDIVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGEEEDVSVYDIADHPDFRFRTTDIVI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD RIGNTEDGAPHKEDEPSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RIGNTEDGAPHKEDEPSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD SVEGSTSGASSDEWEDDSDSWETDNGLVEDEHPKIEEPPIPPLEQPVAPEDKGVVISEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SVEGSTSGASSDEWEDDSDSWETDNGLVEDEHPKIEEPPIPPLEQPVAPEDKGVVISEEA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ATAAVQGAVAMAAPMAGLMEKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTGSPTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ATAAVQGAVAMAAPMAGLMEKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTGSPTSP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD TVEPEKPTREKKFLDDIKKLQENLKKTLDNVAIVEEEKMEAVPDVERKEDKPEGQSPVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TVEPEKPTREKKFLDDIKKLQENLKKTLDNVAIVEEEKMEAVPDVERKEDKPEGQSPVKA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD EWPSETPVLCQQCGGKPGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EWPSETPVLCQQCGGKPGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD EMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFC
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD YLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYN
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD EAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVN
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD RIESWLETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RIESWLETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSD
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD SEGGAQSLASASRDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYPDIGFPLFP
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SEGGAQGLASASRDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYPDIGFPLFP
1210 1220 1230 1240 1250 1260
1270 1280 1290
pF1KSD LSKGFIKSIRGVLTQFRAALLEAGMPECTEDK
::::::::::::::::::::::::::::::::
CCDS32 LSKGFIKSIRGVLTQFRAALLEAGMPECTEDK
1270 1280 1290
>>CCDS33175.2 BIRC6 gene_id:57448|Hs108|chr2 (4857 aa)
initn: 426 init1: 165 opt: 504 Z-score: 322.8 bits: 73.9 E(32554): 1.2e-11
Smith-Waterman score: 506; 31.8% identity (60.9% similar) in 330 aa overlap (830-1146:4456-4774)
800 810 820 830 840 850
pF1KSD EKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTG-SPTSPTVEPEKPTREKKFLDDIK
:.. :: .: . ::: : .. ::.
CCDS33 QSECQTSVGTLLAKMKTCVDTYTNRLRSKRENVKTGVKPDASDQEPEGLTL---LVPDIQ
4430 4440 4450 4460 4470 4480
860 870 880 890 900 910
pF1KSD KLQENLKKTLDNVAIVEEEKMEAVPDVERKED-KPEGQSPVKAEWPSETPVLCQQCGGKP
: : . . .. ...:: . . .: ::. : .:. . . :. .
CCDS33 KTAEIVYAATTSLRQANQEK--KLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKLQFD--
4490 4500 4510 4520 4530
920 930 940 950 960 970
pF1KSD GVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVR--KEMALLATSLP----E
:: .. . . : : . : ..... . .:.. . : .: . :.::::
CCDS33 --TFEMVSEDEDGKLGFKVNYHYMSQVK-NANDANSAARARRLAQEAVTLSTSLPLSSSS
4540 4550 4560 4570 4580 4590
980 990 1000 1010 1020
pF1KSD GIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSG---R
...:. :.:.:....:: ::. ::: .: . ::. .:. ::. :: . : .: :
CCDS33 SVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP-LVNLETTGGHSVR
4600 4610 4620 4630 4640 4650
1030 1040 1050 1060 1070 1080
pF1KSD LNPNLYDNGKVCVSLLGTWIGKGTERWTSK-SSLLQVLISIQGLILVNEPYYNEAGFDSD
.:::::..::::.:.:.:: :. :.:. . ::.::::.:.:.:::: :::.:: :.. .
CCDS33 FNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS
4660 4670 4680 4690 4700 4710
1090 1100 1110 1120 1130 1140
pF1KSD RGLQEGYENSRCYN-EMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVNRIESWL
:: : ..:: :. .. : .: . .: : :.. :..:: ... . : :.
CCDS33 RGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI
4720 4730 4740 4750 4760 4770
1150 1160 1170 1180 1190 1200
pF1KSD ETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSDSEGGAQ
CCDS33 ADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLPCPEGLDPDTDDAPEVCRATTGA
4780 4790 4800 4810 4820 4830
1292 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:08:51 2016 done: Thu Nov 3 19:08:52 2016
Total Scan time: 3.140 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]