FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1706, 569 aa
  1>>>pF1KSDA1706 569 - 569 aa - 569 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2513+/-0.000799; mu= 14.4172+/- 0.048
 mean_var=81.3297+/-16.152, 0's: 0 Z-trim(108.5): 7  B-trim: 0 in 0/52
 Lambda= 0.142216
 statistics sampled from 10219 (10225) to 10219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.314), width:  16
 Scan time:  3.440

The best scores are:                                      opt bits E(32554)
CCDS34619.1 EEPD1 gene_id:80820|Hs108|chr7         ( 569) 3810 791.4       0


>>CCDS34619.1 EEPD1 gene_id:80820|Hs108|chr7              (569 aa)
 initn: 3810 init1: 3810 opt: 3810  Z-score: 4223.8  bits: 791.4 E(32554):    0
Smith-Waterman score: 3810; 99.8% identity (100.0% similar) in 569 aa overlap (1-569:1-569)

               10        20        30        40        50        60
pF1KSD MGSTLGCHRSIPRDPSDLSHSRKFSAACNFSNILVNQERLNINTATEEELMTLPGVTRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGSTLGCHRSIPRDPSDLSHSRKFSAACNFSNILVNQERLNINTATEEELMTLPGVTRAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ARSIVEYREYIGGFKKVEDLALVSGVGATKLEQVKFEICVSSKGSSAQHSPSSLRRDLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ARSIVEYREYIGGFKKVEDLALVSGVGATKLEQVKFEICVSSKGSSAQHSPSSLRRDLLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EQQPHHLATAVPLTPRVNINTATPAQLMSVRGLSEKMALSIVDFRREHGPFRSVEDLVRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EQQPHHLATAVPLTPRVNINTATPAQLMSVRGLSEKMALSIVDFRREHGPFRSVEDLVRM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DGINAAFLDRIRHQVFAERSRPPSTHTNGGLTFTAKPHPSPTSLSLQSEDLDLPPGGPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DGINAAFLDRIRHQVFAERSRPPSTHTNGGLTFTAKPHPSPTSLSLQSEDLDLPPGGPTQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IISTRPSVEAFGGTRDGRPVLRLATWNLQGCSVEKANNPGVREVVCMTLLENSIKLLAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IISTRPSVEAFGGTRDGRPVLRLATWNLQGCSVEKANNPGVREVVCMTLLENSIKLLAVQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELLDREALEKFCTELNQPTLPNIRKWKGPRGCWKAVVAEKPSNQLQKGAGYAGFLWDAAA
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS34 ELLDREALEKFCTELNQPTLPNIRKWKGPRGCWKAVVAEKPSSQLQKGAGYAGFLWDAAA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GMELRDAGSQESSPSNGHGKLAGPSPYLGRFKVGSHDLTLVNLHLAALTLLGSENPSKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GMELRDAGSQESSPSNGHGKLAGPSPYLGRFKVGSHDLTLVNLHLAALTLLGSENPSKNH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SDGHRLASFAQTLQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SDGHRLASFAQTLQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNIST
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD KNPQGSKSLDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KNPQGSKSLDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEFYT
              490       500       510       520       530       540

              550       560         
pF1KSD EKDWSKKDAPRNGSGVALERSEANIKHER
       :::::::::::::::::::::::::::::
CCDS34 EKDWSKKDAPRNGSGVALERSEANIKHER
              550       560         




569 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:59:07 2016 done: Thu Nov  3 06:59:08 2016
 Total Scan time:  3.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]