Result of FASTA (ccds) for
pF1KSDA1688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1688, 1083 aa
1>>>pF1KSDA1688 1083 - 1083 aa - 1083 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4640+/-0.0011; mu= -1.0693+/- 0.066
mean_var=297.5125+/-61.048, 0's: 0 Z-trim(112.5): 74 B-trim: 166 in 1/52
Lambda= 0.074357
statistics sampled from 13147 (13214) to 13147 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.406), width: 16
Scan time: 5.110
The best scores are: opt bits E(32554)
CCDS78374.1 ARHGAP39 gene_id:80728|Hs108|chr8 (1083) 7426 811.2 0
CCDS34971.1 ARHGAP39 gene_id:80728|Hs108|chr8 (1114) 5809 637.7 4.1e-182
>>CCDS78374.1 ARHGAP39 gene_id:80728|Hs108|chr8 (1083 aa)
initn: 7426 init1: 7426 opt: 7426 Z-score: 4320.5 bits: 811.2 E(32554): 0
Smith-Waterman score: 7426; 100.0% identity (100.0% similar) in 1083 aa overlap (1-1083:1-1083)
10 20 30 40 50 60
pF1KSD MSQTQDYECRSHNVDLPESRIPGSNTRLEWVEIIEPRTRERMYANLVTGECVWDPPAGVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MSQTQDYECRSHNVDLPESRIPGSNTRLEWVEIIEPRTRERMYANLVTGECVWDPPAGVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IKRTSENQWWELFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IKRTSENQWWELFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ESSPGRGSSVSREGSTSSSLEPEPDTEKAQELPARAGRPAAFGTVKEDSGSSSPPGVFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ESSPGRGSSVSREGSTSSSLEPEPDTEKAQELPARAGRPAAFGTVKEDSGSSSPPGVFLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KDYEIYRDYSADGQLLHYRTSSLRWNSGAKERMLIKVADREPSFLAAQGNGYAPDGPPGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KDYEIYRDYSADGQLLHYRTSSLRWNSGAKERMLIKVADREPSFLAAQGNGYAPDGPPGV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RSRRPSGSQHSPSLQTFAPEADGTIFFPERRPSPFLKRAELPGSSSPLLAQPRKPSGDSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RSRRPSGSQHSPSLQTFAPEADGTIFFPERRPSPFLKRAELPGSSSPLLAQPRKPSGDSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD PSSPRYGYEPPLYEEPPVEYQAPIYDEPPMDVQFEAGGGYQAGSPQRSPGRKPRPFLQPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PSSPRYGYEPPLYEEPPVEYQAPIYDEPPMDVQFEAGGGYQAGSPQRSPGRKPRPFLQPN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KQGPPSPCQQLVLTKQKCPERFLSLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KQGPPSPCQQLVLTKQKCPERFLSLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NPGGGSYSLQPSPCLLRDQRLGVKSGDYSTMEGPELRHSQPPTPLPQAQEDAMSWSSQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NPGGGSYSLQPSPCLLRDQRLGVKSGDYSTMEGPELRHSQPPTPLPQAQEDAMSWSSQQD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TLSSTGYSPGTRKRKSRKPSLCQATSATPTEGPGDLLVEQPLAEEQPPCGTSLAPVKRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TLSSTGYSPGTRKRKSRKPSLCQATSATPTEGPGDLLVEQPLAEEQPPCGTSLAPVKRAE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GEAEGARGAAEPFLAQARLAWEAQQAHFHMKQRSSWDSQQDGSGYESDGALPLPMPGPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GEAEGARGAAEPFLAQARLAWEAQQAHFHMKQRSSWDSQQDGSGYESDGALPLPMPGPVV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD RAFSEDEALAQQENRHWRRGTFEKLGFPQILLEKSVSVQTNLASPEPYLHPSQSEDLAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RAFSEDEALAQQENRHWRRGTFEKLGFPQILLEKSVSVQTNLASPEPYLHPSQSEDLAAC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AQFESSRQSRSGVPSSSCVFPTFTLRKPSSETDIENWASKHFNKHTQGLFRRKVSIANML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AQFESSRQSRSGVPSSSCVFPTFTLRKPSSETDIENWASKHFNKHTQGLFRRKVSIANML
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD AWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEVATKGWSVQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEVATKGWSVQGL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD RDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD GVAISTYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAKNAVFSPSMFGSALQEVMGMQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GVAISTYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAKNAVFSPSMFGSALQEVMGMQR
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD ERYPERQLPWVQTRLSEEVLALNGDQTEGIFRVPGDIDEVNALKLQVDQWKVPTGLEDPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ERYPERQLPWVQTRLSEEVLALNGDQTEGIFRVPGDIDEVNALKLQVDQWKVPTGLEDPH
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD VPASLLKLWYRELEEPLIPHEFYEQCIAHYDSPEAAVAVVHALPRINRMVLCYLIRFLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VPASLLKLWYRELEEPLIPHEFYEQCIAHYDSPEAAVAVVHALPRINRMVLCYLIRFLQV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD FVQPANVAVTKMDVSNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRVLIQHLDTSFME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FVQPANVAVTKMDVSNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRVLIQHLDTSFME
1030 1040 1050 1060 1070 1080
pF1KSD GVL
:::
CCDS78 GVL
>>CCDS34971.1 ARHGAP39 gene_id:80728|Hs108|chr8 (1114 aa)
initn: 5798 init1: 5798 opt: 5809 Z-score: 3382.9 bits: 637.7 E(32554): 4.1e-182
Smith-Waterman score: 7354; 97.2% identity (97.2% similar) in 1114 aa overlap (1-1083:1-1114)
10 20 30 40 50 60
pF1KSD MSQTQDYECRSHNVDLPESRIPGSNTRLEWVEIIEPRTRERMYANLVTGECVWDPPAGVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSQTQDYECRSHNVDLPESRIPGSNTRLEWVEIIEPRTRERMYANLVTGECVWDPPAGVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IKRTSENQWWELFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IKRTSENQWWELFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ESSPGRGSSVSREGSTSSSLEPEPDTEKAQELPARAGRPAAFGTVKEDSGSSSPPGVFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ESSPGRGSSVSREGSTSSSLEPEPDTEKAQELPARAGRPAAFGTVKEDSGSSSPPGVFLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KDYEIYRDYSADGQLLHYRTSSLRWNSGAKERMLIKVADREPSFLAAQGNGYAPDGPPGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KDYEIYRDYSADGQLLHYRTSSLRWNSGAKERMLIKVADREPSFLAAQGNGYAPDGPPGV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RSRRPSGSQHSPSLQTFAPEADGTIFFPERRPSPFLKRAELPGSSSPLLAQPRKPSGDSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSRRPSGSQHSPSLQTFAPEADGTIFFPERRPSPFLKRAELPGSSSPLLAQPRKPSGDSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD PSSPRYGYEPPLYEEPPVEYQAPIYDEPPMDVQFEAGGGYQAGSPQRSPGRKPRPFLQPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PSSPRYGYEPPLYEEPPVEYQAPIYDEPPMDVQFEAGGGYQAGSPQRSPGRKPRPFLQPN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KQGPPSPCQQLVLTKQKCPERFLSLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KQGPPSPCQQLVLTKQKCPERFLSLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NPGGGSYSLQPSPCLLRDQRLGVKSGDYSTMEGPELRHSQPPTPLPQAQEDAMSWSSQQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NPGGGSYSLQPSPCLLRDQRLGVKSGDYSTMEGPELRHSQPPTPLPQAQEDAMSWSSQQD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TLSSTGYSPGTRKRKSRKPSLCQATSATPTEGPGDLLVEQPLAEEQPPCGTSLAPVKRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TLSSTGYSPGTRKRKSRKPSLCQATSATPTEGPGDLLVEQPLAEEQPPCGTSLAPVKRAE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GEAEGARGAAEPFLAQARLAWEAQQAHFHMKQRSSWDSQQDGSGYESDGALPLPMPGPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GEAEGARGAAEPFLAQARLAWEAQQAHFHMKQRSSWDSQQDGSGYESDGALPLPMPGPVV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD RAFSEDEALAQQENRHWRRGTFEKLGFPQILLEKSVSVQTNLASPEPYLHPSQSEDLAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RAFSEDEALAQQENRHWRRGTFEKLGFPQILLEKSVSVQTNLASPEPYLHPSQSEDLAAC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AQFESSRQSRSGVPSSSCVFPTFTLRKPSSETDIENWASKHFNKHTQGLFRRKVSIANML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AQFESSRQSRSGVPSSSCVFPTFTLRKPSSETDIENWASKHFNKHTQGLFRRKVSIANML
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD AWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEVATKGWSVQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEVATKGWSVQGL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD RDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTK
790 800 810 820 830 840
850 860
pF1KSD -------------------------------GVAISTYAKYCYHKLQKAALTGAKKGLKK
:::::::::::::::::::::::::::::
CCDS34 VTQHIKELLERNTKKKSKLRKKPKPYVEEPDGVAISTYAKYCYHKLQKAALTGAKKGLKK
850 860 870 880 890 900
870 880 890 900 910 920
pF1KSD PNVEEIRHAKNAVFSPSMFGSALQEVMGMQRERYPERQLPWVQTRLSEEVLALNGDQTEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PNVEEIRHAKNAVFSPSMFGSALQEVMGMQRERYPERQLPWVQTRLSEEVLALNGDQTEG
910 920 930 940 950 960
930 940 950 960 970 980
pF1KSD IFRVPGDIDEVNALKLQVDQWKVPTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQCIAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IFRVPGDIDEVNALKLQVDQWKVPTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQCIAH
970 980 990 1000 1010 1020
990 1000 1010 1020 1030 1040
pF1KSD YDSPEAAVAVVHALPRINRMVLCYLIRFLQVFVQPANVAVTKMDVSNLAMVMAPNCLRCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YDSPEAAVAVVHALPRINRMVLCYLIRFLQVFVQPANVAVTKMDVSNLAMVMAPNCLRCQ
1030 1040 1050 1060 1070 1080
1050 1060 1070 1080
pF1KSD SDDPRVIFENTRKEMSFLRVLIQHLDTSFMEGVL
::::::::::::::::::::::::::::::::::
CCDS34 SDDPRVIFENTRKEMSFLRVLIQHLDTSFMEGVL
1090 1100 1110
1083 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:55:35 2016 done: Thu Nov 3 06:55:36 2016
Total Scan time: 5.110 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]