FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1614, 1190 aa
  1>>>pF1KSDA1614 1190 - 1190 aa - 1190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2535+/-0.000871; mu= 0.9149+/- 0.052
 mean_var=264.7610+/-53.048, 0's: 0 Z-trim(115.4): 13  B-trim: 2 in 1/53
 Lambda= 0.078822
 statistics sampled from 15978 (15987) to 15978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.491), width:  16
 Scan time:  6.290

The best scores are:                                      opt bits E(32554)
CCDS41442.1 KIAA1614 gene_id:57710|Hs108|chr1      (1190) 8244 951.4       0


>>CCDS41442.1 KIAA1614 gene_id:57710|Hs108|chr1           (1190 aa)
 initn: 8244 init1: 8244 opt: 8244  Z-score: 5076.9  bits: 951.4 E(32554):    0
Smith-Waterman score: 8244; 99.7% identity (99.9% similar) in 1190 aa overlap (1-1190:1-1190)

               10        20        30        40        50        60
pF1KSD MEGTEAAAAKPAGGSPQGPKTGSGTASPVEGTSAVEWSGPEPQLDNGHPPRPWPCPQENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEGTEAAAAKPAGGSPQGPKTGSGTASPVEGTSAVEWSGPEPQLDNGHPPRPWPCPQENR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TSSPMAPQPPRVWGVQLQGPSVLESKVRALKEKMTVAKQGVSPCSASQEWSSPKKPQCRR
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSSLMAPQPPRVWGVQLQGPSVLESKVRALKEKMTVAKQGVSPCSASQEWSSPKKPQCRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GKAGRAGTPSEGSFLPGAVVAPRTQNLPDGQLDGSINEEQPARDGGPRLPRPPAPGREYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GKAGRAGTPSEGSFLPGAVVAPRTQNLPDGQLDGSINEEQPARDGGPRLPRPPAPGREYC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NRGSPWPPEAEWTLPDHDRGPLLGPSSLQQSPIHGVTPGRPGGPGHCNKIIHIPSPRTGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NRGSPWPPEAEWTLPDHDRGPLLGPSSLQQSPIHGVTPGRPGGPGHCNKIIHIPSPRTGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SYPFPDGVVTEADLDSTSLTSEEVFVPRTALLGERWRAGDLEALGAGSSVLSLSDRVERN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SYPFPDGVVTEADLDSTSLTSEEVFVPRTALLGERWRAGDLEALGAGSSVLSLSDRVERN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLLLQEMLNVSGQSPRKVGTPAWTPSWDTAAPERPVGDVDWASGTSLQDSGQNRTVGPNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RLLLQEMLNVSGQSPRKVGTPAWTPSWDTAAPERPVGDVDWASGTSLQDSGQNRTVGPNP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EPVLSPRHEEATHLLQRARMKARTRPLRASHDIVPTITQGSRDGHRSPARDPRTTPACRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EPVLSPRHEEATHLLQRARMKARTRPLRASHDIVPTITQGSRDGHRSPARDPRTTPACRD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SLQNGHTSDSSSGESSGGHRPRRGPSPSHVRFEDESAREAEFRHLERLQQRQRQVLSTVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SLQNGHTSDSSSGESSGGHRPRRGPSPSHVRFEDESAREAEFRHLERLQQRQRQVLSTVL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD QAADQGPLRSKPDLADYINGAPRLRDAGQGTFHRLVGSLDRRGHPAPPAPGSERRCQACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QAADQGPLRSKPDLADYINGAPRLRDAGQGTFHRLVGSLDRRGHPAPPAPGSERRCQACG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SCIDDPRPAQGKAPPVPRTLQELQAACGMERVLGGLSSPLRLLPAEPRLHMEWIRETHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SCIDDPRPAQGKAPPVPRTLQELQAACGMERVLGGLSSPLRLLPAEPRLHMEWIRETHIG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD DTVCPAEVDSALDSTDNSDNCRTDSEEAGTSQAGWACGRTQGSSPRLRLRGSRPRGHRWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DTVCPAEVDSALDSTDNSDNCRTDSEEAGTSQAGWACGRTQGSSPRLRLRGSRPRGHRWS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KKAEAELPWGLQAQQHLPRADDVEVENEVKEGRGHTPEGTLFLREDAKPPDLELKRVSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KKAEAELPWGLQAQQHLPRADDVEVENEVKEGRGHTPEGTLFLREDAKPPDLELKRVSLG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD PQWQPGPGLGSHQPHPLDSRTPCRTAYATTAPMTPESSGPGGQAQVTESHESLEIVSPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PQWQPGPGLGSHQPHPLDSRTPCRTAYATTAPMTPESSGPGGQAQVTESHESLEIVSPSS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD LQQSHAEPSAPHQAWQPTASFCPEGWAPTPPPSRKTTSPVSHRKAALAGLLRLGDQTEPV
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS41 LQQSHAEPSAPHQAWQPTASLCPEGWAPTPPPSRKTTSPVSHRKAALAGLLRLGDQTEPV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD GIPRPPSRSAVLRTCELPPSQTQPSRPQVRHPLLALSTNNCNNSAPRGLQEPYGGAVHEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GIPRPPSRSAVLRTCELPPSQTQPSRPQVRHPLLALSTNNCNNSAPRGLQEPYGGAVHEG
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD RVERGPCSREPEPPLENSRDGGPQGFLGSADVATINSTGITLSLSSEESESSKESEGSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RVERGPCSREPEPPLENSRDGGPQGFLGSADVATINSTGITLSLSSEESESSKESEGSLQ
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD RTGSGSGGHVLSRASAGAGTGPGSPSAAPLDQNKKRSSSIASTLGLKKLFSALGQSSRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RTGSGSGGHVLSRASAGAGTGPGSPSAAPLDQNKKRSSSIASTLGLKKLFSALGQSSRPK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD LGKSRSYSVEQLQPAPPGLTSQSRAPSLQSLHPVSPSHQRRKAASFQNLHSLLSSKGDRS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS41 LGKSRSYSVEQLQPAPPGLTSQSRAPSLQSLHPVSPSHQRRKAASFQNLHSLLSSKGNRS
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD SLYLVAGPGDHSAAGRPAKTSPRRALSVEDVGAPSLARTVGRLVEVFPDGTSQLQLQRSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SLYLVAGPGDHSAAGRPAKTSPRRALSVEDVGAPSLARTVGRLVEVFPDGTSQLQLQRSP
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190
pF1KSD GGTFGFCVASGNGRPDSGMPSPLPQPHGWGGLSKQGRAFWLWSEAFLVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGTFGFCVASGNGRPDSGMPSPLPQPHGWGGLSKQGRAFWLWSEAFLVFG
             1150      1160      1170      1180      1190




1190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:50:18 2016 done: Thu Nov  3 06:50:19 2016
 Total Scan time:  6.290 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]