FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1612, 542 aa
  1>>>pF1KSDA1612 542 - 542 aa - 542 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5140+/-0.000828; mu= 13.3592+/- 0.050
 mean_var=94.5465+/-18.775, 0's: 0 Z-trim(109.6): 8  B-trim: 0 in 0/51
 Lambda= 0.131902
 statistics sampled from 11031 (11033) to 11031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.339), width:  16
 Scan time:  3.570

The best scores are:                                      opt bits E(32554)
CCDS10761.2 OGFOD1 gene_id:55239|Hs108|chr16       ( 542) 3707 715.6 3.6e-206


>>CCDS10761.2 OGFOD1 gene_id:55239|Hs108|chr16            (542 aa)
 initn: 3707 init1: 3707 opt: 3707  Z-score: 3814.9  bits: 715.6 E(32554): 3.6e-206
Smith-Waterman score: 3707; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542)

               10        20        30        40        50        60
pF1KSD MNGKRPAEPGPARVGKKGKKEVMAEFSDAVTEETLKKQVAEAWSRRTPFSHEVIVMDMDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MNGKRPAEPGPARVGKKGKKEVMAEFSDAVTEETLKKQVAEAWSRRTPFSHEVIVMDMDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FLHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FLHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVPPWDRSMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVPPWDRSMGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TLDLYSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TLDLYSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SLTRPPNYFEPPIPRSPHIPQDHEILYDWINPTYLDMDYQVQIQEEFEESSEILLKEFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLTRPPNYFEPPIPRSPHIPQDHEILYDWINPTYLDMDYQVQIQEEFEESSEILLKEFLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PEKFTKVCEALEHGHVEWSSRGPPNKRFYEKAEESKLPEILKECMKLFRSEALFLLLSNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEKFTKVCEALEHGHVEWSSRGPPNKRFYEKAEESKLPEILKECMKLFRSEALFLLLSNF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD TGLKLHFLAPSEEDEMNDKKEAETTDITEEGTSHSPPEPENNQMAISNNSQQSNEQTDPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TGLKLHFLAPSEEDEMNDKKEAETTDITEEGTSHSPPEPENNQMAISNNSQQSNEQTDPE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PEENETKKESSVPMCQGELRHWKTGHYTLIHDHSKAEFALDLILYCGCEGWEPEYGGFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEENETKKESSVPMCQGELRHWKTGHYTLIHDHSKAEFALDLILYCGCEGWEPEYGGFTS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD YIAKGEDEELLTVNPESNSLALVYRDRETLKFVKHINHRSLEQKKTFPNRTGFWDFSFIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YIAKGEDEELLTVNPESNSLALVYRDRETLKFVKHINHRSLEQKKTFPNRTGFWDFSFIY
              490       500       510       520       530       540

         
pF1KSD YE
       ::
CCDS10 YE
         




542 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:48:55 2016 done: Thu Nov  3 06:48:55 2016
 Total Scan time:  3.570 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]