FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1585, 577 aa
  1>>>pF1KSDA1585 577 - 577 aa - 577 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8579+/-0.000988; mu= 12.8096+/- 0.060
 mean_var=122.3697+/-23.859, 0's: 0 Z-trim(108.8): 21  B-trim: 9 in 1/50
 Lambda= 0.115941
 statistics sampled from 10454 (10466) to 10454 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.321), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS33861.1 MSL2 gene_id:55167|Hs108|chr3          ( 577) 3849 655.2 6.3e-188
CCDS46922.1 MSL2 gene_id:55167|Hs108|chr3          ( 503) 3325 567.5 1.4e-161


>>CCDS33861.1 MSL2 gene_id:55167|Hs108|chr3               (577 aa)
 initn: 3849 init1: 3849 opt: 3849  Z-score: 3487.3  bits: 655.2 E(32554): 6.3e-188
Smith-Waterman score: 3849; 100.0% identity (100.0% similar) in 577 aa overlap (1-577:1-577)

               10        20        30        40        50        60
pF1KSD MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TCQHYVCKTCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TCQHYVCKTCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTTDPQASLSPMSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTTDPQASLSPMSES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHSNTIDVCNTVDIKTEDLSDSLPPVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHSNTIDVCNTVDIKTEDLSDSLPPVCD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKIAKLNRKRSRSESDSEKVQPLPISTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKIAKLNRKRSRSESDSEKVQPLPISTI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SKTKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SKTKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD CPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNAS
              490       500       510       520       530       540

              550       560       570       
pF1KSD TSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC
       :::::::::::::::::::::::::::::::::::::
CCDS33 TSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC
              550       560       570       

>>CCDS46922.1 MSL2 gene_id:55167|Hs108|chr3               (503 aa)
 initn: 3325 init1: 3325 opt: 3325  Z-score: 3014.5  bits: 567.5 E(32554): 1.4e-161
Smith-Waterman score: 3325; 100.0% identity (100.0% similar) in 503 aa overlap (75-577:1-503)

           50        60        70        80        90       100    
pF1KSD CVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYK
                                     ::::::::::::::::::::::::::::::
CCDS46                               MMMKPSCSWCKDYEQFEENKQLSILVNCYK
                                             10        20        30

          110       120       130       140       150       160    
pF1KSD KLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTS
               40        50        60        70        80        90

          170       180       190       200       210       220    
pF1KSD EPTTDPQASLSPMSESTLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHSNTIDVCNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EPTTDPQASLSPMSESTLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHSNTIDVCNTV
              100       110       120       130       140       150

          230       240       250       260       270       280    
pF1KSD DIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTE
              160       170       180       190       200       210

          290       300       310       320       330       340    
pF1KSD VCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKIAKLNRKRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKIAKLNRKRSR
              220       230       240       250       260       270

          350       360       370       380       390       400    
pF1KSD SESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLS
              280       290       300       310       320       330

          410       420       430       440       450       460    
pF1KSD TKSMKKSHEHGSKKSHSKTKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TKSMKKSHEHGSKKSHSKTKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKC
              340       350       360       370       380       390

          470       480       490       500       510       520    
pF1KSD GRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTR
              400       410       420       430       440       450

          530       540       550       560       570       
pF1KSD LTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC
              460       470       480       490       500   




577 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:43:57 2016 done: Thu Nov  3 06:43:58 2016
 Total Scan time:  3.120 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]