FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1519, 647 aa
  1>>>pF1KSDA1519 647 - 647 aa - 647 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3397+/-0.000995; mu= 6.6574+/- 0.059
 mean_var=191.1641+/-38.976, 0's: 0 Z-trim(111.6): 30  B-trim: 595 in 1/52
 Lambda= 0.092762
 statistics sampled from 12506 (12523) to 12506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.385), width:  16
 Scan time:  3.710

The best scores are:                                      opt bits E(32554)
CCDS34126.1 CEP72 gene_id:55722|Hs108|chr5         ( 647) 4260 582.9 4.7e-166
CCDS32467.1 LRRC36 gene_id:55282|Hs108|chr16       ( 754)  468 75.5 3.1e-13


>>CCDS34126.1 CEP72 gene_id:55722|Hs108|chr5              (647 aa)
 initn: 4260 init1: 4260 opt: 4260  Z-score: 3094.7  bits: 582.9 E(32554): 4.7e-166
Smith-Waterman score: 4260; 99.8% identity (100.0% similar) in 647 aa overlap (1-647:1-647)

               10        20        30        40        50        60
pF1KSD MARAGPRLVLSEEAVRAKSGLGPHRDLAELQSLSIPGTYQEKITHLGHSLMSLTGLKSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MARAGPRLVLSEEAVRAKSGLGPHRDLAELQSLSIPGTYQEKITHLGHSLMSLTGLKSLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LSRNSLVSLEGIQYLTALESLNLYYNCISSLAEVFRLHALTELVDVDFRLNPVVKVEPDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSRNSLVSLEGIQYLTALESLNLYYNCISSLAEVFRLHALTELVDVDFRLNPVVKVEPDY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RLFVVHLLPKLQQLDDRPVRASERKASRLHFASEDSLDSKESVPASLKEGRPHHPRAKCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RLFVVHLLPKLQQLDDRPVRASERKASRLHFASEDSLDSKESVPASLKEGRPHHPRAKCT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EALAKQSLVMDADDEAVLNLIAECEWDLGRPPGSTSFSQKGREADSRGSQESRHLLSPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EALAKQSLVMDADDEAVLNLIAECEWDLGRPPGSTSFSQKGREADSRGSQESRHLLSPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VQYQCGDSGKQGRETRRSSCRGCCLEKMPWSQLCGELPPLYGAEPEASRAPRPHTYFTPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VQYQCGDSGKQGRETRRSSCRGCCLEKMPWSQLCGELPPLYGAEPEASRAPRPHTYFTPH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PDSMDTEDSASSQKLDLSGEMVPGPLPAPGKCRKRRMPVGRFQTFSDQEGLGCPERTHGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PDSMDTEDSASSQKLDLSGEMVPGPLPAPGKCRKRRMPVGRFQTFSDQEGLGCPERTHGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SVPKESLSRQDSSESRNGRTLSQPEASETEEQRSRGVTDTREPSPGSHSALPGKKTALQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SVPKESLSRQDSSESRNGRTLSQPEASETEEQRSRGVTDTREPSPGSHSALPGKKTALQA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ALLETLLDLVDRSWGGCRSLHSNEAFLAQARHILSSVEEFTAAQDSSAMVGEDVGSLALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALLETLLDLVDRSWGGCRSLHSNEAFLAQARHILSSVEEFTAAQDSSAMVGEDVGSLALE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD SKSLQSRLAEQQQQHAREMSEVTAELHHAHKELDDLRQHLDKSLEENSRLKSLLLSMKKE
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS34 SKSLQSRLAEQQQQHAREMSEVTAELHHTHKELDDLRQHLDKSLEENSRLKSLLLSMKKE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VKSADTAATLNLQIAGLQTSVKRLCGEIVELKQHLEHYDKIQELTQMLQESHSSLVSTNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VKSADTAATLNLQIAGLQTSVKRLCGEIVELKQHLEHYDKIQELTQMLQESHSSLVSTNE
              550       560       570       580       590       600

              610       620       630       640       
pF1KSD HLLQELSQVRAQHRAEVEQMHWSYQELKKTMALFPHSSASHGGCQAC
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HLLQELSQVRAQHRAEVEQMHWSYQELKKTMALFPHSSASHGGCQAC
              610       620       630       640       

>>CCDS32467.1 LRRC36 gene_id:55282|Hs108|chr16            (754 aa)
 initn: 586 init1: 422 opt: 468  Z-score: 351.2  bits: 75.5 E(32554): 3.1e-13
Smith-Waterman score: 496; 27.6% identity (53.2% similar) in 677 aa overlap (10-629:7-669)

               10        20         30        40        50         
pF1KSD MARAGPRLVLSEEAVRAKSGLGPHR-DLAELQSLSIPGTYQEKITHLGHSLMSLTGLKSL
                :.::..:  ..:  .. .:.:  :::. :.:  ::  .: .. .. .:.::
CCDS32    MAEQWELDEEGIRRLGALTLEQPELVE--SLSLQGSYAGKIHSIGDAFRNFKNLRSL
                  10        20          30        40        50     

      60        70        80        90       100       110         
pF1KSD DLSRNSLVSLEGIQYLTALESLNLYYNCISSLAEVFRLHALTELVDVDFRLNPVVKVEPD
       ::::: ..::.::::: .:..:::::: : ::.:: ::. :  : ..:.::::::. . :
CCDS32 DLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNPVVRKDTD
          60        70        80        90       100       110     

     120       130       140       150             160       170   
pF1KSD YRLFVVHLLPKLQQLDDRPVRASERKASRLHFA----SEDSLDS--KESVPASLKEGRPH
       ::::.:. :  :..:::: :: .::::..:::.    ::. :    : :   ..:.    
CCDS32 YRLFAVYTLQTLEKLDDRTVREGERKAAKLHFSQLGNSENFLLEVEKSSREKTMKNCVTG
         120       130       140       150       160       170     

           180       190       200       210       220       230   
pF1KSD HPRAKCTEALAKQSLVMDADDEAVLNLIAECEWDLGRPPGSTSFSQKGREADSRGSQESR
       .  :. . : . . . ::..     .:.        .   ::: .: .   :.. .    
CCDS32 ESSASKVSANVDSRIEMDSNK----GLFIPFPNREIKDSLSTSATQGNGTRDQKLDTFPL
         180       190           200       210       220       230 

           240       250       260          270         280        
pF1KSD HLLSPQLVQYQCGDSGKQGRETRRSSCRGCCL---EKMPWS--QLCGELPPLYGAEPEAS
          . .... .  ....:  : :. : :   .   :::     :.        :. ::  
CCDS32 GTQTQEVARREMPSDNHQEDEFRHYSPRQSTVRSPEKMTREGYQVSFLDNKSSGSSPEKE
             240       250       260       270       280       290 

      290       300           310       320               330      
pF1KSD RAPRPHTYFTPHPDSM----DTEDSASSQKLDLSGEM--------VPGPLPAPGKCRKRR
         :.: :.   :  :.    :. ::.. .  .: ...            :   :.  :: 
CCDS32 LIPKPDTFHLTHDASLSKCLDVGDSSQIHPYQLPSDVGLENYDSCYSQTLSLHGSLGKRP
             300       310       320       330       340       350 

        340       350        360       370                 380     
pF1KSD MPVGRFQTFSDQEGLGCPER-THGSSVPKESLSRQDSSESR----------NGRTLSQPE
       .    .: .: . .       .:. .    :::  ::: .:          . .  :.: 
CCDS32 QRSKNYQEYSIKPSNDIKTTASHSCGDLLTSLSNPDSSTGRLLKLSSDLYATTHFNSDPA
             360       370       380       390       400       410 

         390       400         410       420       430       440   
pF1KSD ASETEEQRSRGVTDTREPSPGS--HSALPGKKTALQAALLETLLDLVDRSWGGCRSLHSN
       .  . ::.     :   :. ::  ..:. :..:.   .:: .      :.    :::  .
CCDS32 VLVNVEQQLSTSLDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRSLSPS
             420       430       440       450       460       470 

           450       460         470       480       490       500 
pF1KSD EAFLAQARHILSSVEEFTAAQDS--SAMVGEDVGSLALESKSLQSRLAEQQQQHAREMSE
       .  .    .::....   . ::.  :  .. :.:::    ..: .  .   . .. ... 
CCDS32 KRGFKWKDNILANLNLKHGFQDATGSEPLSSDLGSL----HGLAGNHSPPISARTPHVAT
             480       490       500           510       520       

             510       520       530           540                 
pF1KSD VTAELHHAHKELDDLRQHLDKSLEENSRL----KSLLLSMKKEVKSA--------DTAAT
       :  .:     :: : . . . ::  :...    ..::::.   . :         ::  .
CCDS32 VLRQLL----ELVDKHWNGSGSLLLNKKFLGPARDLLLSLVVPAPSQPRCCSHPEDTMKA
       530           540       550       560       570       580   

     550       560       570           580       590        600    
pF1KSD LNLQIAGLQTSVKRLCGEIVELKQHL----EHYDKIQELTQMLQESHS-SLVSTNE-HLL
       .  .   :. ... . ...  :::.:    :.   ..:  :.:.:. . :.:: .. :  
CCDS32 FCRRELELKEAAQLVPNDMESLKQKLVRVLEENLILSEKIQQLEEGAAISIVSGQQSHTY
           590       600       610       620       630       640   

           610       620       630       640                       
pF1KSD QELSQVRAQHRAEVEQMHWSYQELKKTMALFPHSSASHGGCQAC                
       ..: .   :   .:  ..    .:::                                  
CCDS32 DDLLHKNQQLTMQVACLNQELAQLKKLEKTVAILHESQRSLVVTNEYLLQQLNKEPKGYS
           650       660       670       680       690       700   




647 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:33:54 2016 done: Thu Nov  3 06:33:55 2016
 Total Scan time:  3.710 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]