Result of FASTA (omim) for
pF1KSDA1499
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1499, 617 aa
1>>>pF1KSDA1499 617 - 617 aa - 617 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2327+/-0.000376; mu= 21.0789+/- 0.024
mean_var=90.6310+/-18.131, 0's: 0 Z-trim(114.7): 37 B-trim: 0 in 0/53
Lambda= 0.134721
statistics sampled from 24621 (24640) to 24621 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.289), width: 16
Scan time: 10.090
The best scores are: opt bits E(85289)
XP_011523281 (OMIM: 606590) PREDICTED: nuclear pro ( 617) 4214 829.6 0
NP_060391 (OMIM: 606590) nuclear protein localizat ( 608) 3773 743.9 3.8e-214
XP_011523283 (OMIM: 606590) PREDICTED: nuclear pro ( 613) 3753 740.0 5.7e-213
XP_011523282 (OMIM: 606590) PREDICTED: nuclear pro ( 616) 3741 737.6 2.9e-212
XP_011523284 (OMIM: 606590) PREDICTED: nuclear pro ( 576) 3740 737.4 3.1e-212
XP_016880319 (OMIM: 606590) PREDICTED: nuclear pro ( 390) 2200 437.9 3e-122
>>XP_011523281 (OMIM: 606590) PREDICTED: nuclear protein (617 aa)
initn: 4214 init1: 4214 opt: 4214 Z-score: 4428.7 bits: 829.6 E(85289): 0
Smith-Waterman score: 4214; 100.0% identity (100.0% similar) in 617 aa overlap (1-617:1-617)
10 20 30 40 50 60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSA
550 560 570 580 590 600
610
pF1KSD MQRVETRPPCQARGRLR
:::::::::::::::::
XP_011 MQRVETRPPCQARGRLR
610
>>NP_060391 (OMIM: 606590) nuclear protein localization (608 aa)
initn: 3772 init1: 3772 opt: 3773 Z-score: 3965.5 bits: 743.9 E(85289): 3.8e-214
Smith-Waterman score: 3773; 97.9% identity (98.4% similar) in 573 aa overlap (1-572:1-573)
10 20 30 40 50 60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
490 500 510 520 530 540
550 560 570 580 590
pF1KSD QTWKRSEQWATIEQLCSEYPHPLPR-HPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPS
::::::::::::::::: :: : ...:
NP_060 QTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQPGTGHC
550 560 570 580 590 600
600 610
pF1KSD AMQRVETRPPCQARGRLR
NP_060 EMCSLPRT
>>XP_011523283 (OMIM: 606590) PREDICTED: nuclear protein (613 aa)
initn: 2545 init1: 2545 opt: 3753 Z-score: 3944.5 bits: 740.0 E(85289): 5.7e-213
Smith-Waterman score: 3753; 97.1% identity (97.6% similar) in 578 aa overlap (1-572:1-578)
10 20 30 40 50 60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
310 320 330 340 350 360
370 380 390 400 410
pF1KSD GHFGSKFVTAVATG-----GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGLSLAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD NEELAQTWKRSEQWATIEQLCSEYPHPLPR-HPVAGAGEQPTLHSSPLPVVPWIPHPAAS
:::::::::::::::::::::: :: : ...:
XP_011 NEELAQTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQP
550 560 570 580 590 600
600 610
pF1KSD WQVPSAMQRVETRPPCQARGRLR
XP_011 GTGHCEMCSLPRT
610
>>XP_011523282 (OMIM: 606590) PREDICTED: nuclear protein (616 aa)
initn: 3755 init1: 2545 opt: 3741 Z-score: 3931.8 bits: 737.6 E(85289): 2.9e-212
Smith-Waterman score: 3741; 98.9% identity (99.1% similar) in 562 aa overlap (1-557:1-562)
10 20 30 40 50 60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
310 320 330 340 350 360
370 380 390 400 410
pF1KSD GHFGSKFVTAVATG-----GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGLSLAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD NEELAQTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASW
:::::::::::::::::::::.
XP_011 NEELAQTWKRSEQWATIEQLCTSRVAGITDVYHHTWRCHLYAQLAGSSQVSMSTAPSGAP
550 560 570 580 590 600
>>XP_011523284 (OMIM: 606590) PREDICTED: nuclear protein (576 aa)
initn: 3754 init1: 2545 opt: 3740 Z-score: 3931.2 bits: 737.4 E(85289): 3.1e-212
Smith-Waterman score: 3740; 98.9% identity (99.1% similar) in 562 aa overlap (1-557:1-562)
10 20 30 40 50 60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
310 320 330 340 350 360
370 380 390 400 410
pF1KSD GHFGSKFVTAVATG-----GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGLSLAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD NEELAQTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASW
:::::::::::::::::::::.
XP_011 NEELAQTWKRSEQWATIEQLCNSQGTCAGLSPGYIA
550 560 570
>>XP_016880319 (OMIM: 606590) PREDICTED: nuclear protein (390 aa)
initn: 2214 init1: 1224 opt: 2200 Z-score: 2315.7 bits: 437.9 E(85289): 3e-122
Smith-Waterman score: 2200; 98.2% identity (98.5% similar) in 336 aa overlap (227-557:1-336)
200 210 220 230 240 250
pF1KSD HLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKTGNQHFGYLYGRY
::::::::::::::::::::::::::::::
XP_016 MFENHTVADRFLDFWRKTGNQHFGYLYGRY
10 20 30
260 270 280 290 300 310
pF1KSD TEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLV
40 50 60 70 80 90
320 330 340 350 360 370
pF1KSD SEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATG--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGLS
100 110 120 130 140 150
380 390 400 410 420 430
pF1KSD ---GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQYVPDVFYKDVDK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQYVPDVFYKDVDK
160 170 180 190 200 210
440 450 460 470 480 490
pF1KSD FGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATY
220 230 240 250 260 270
500 510 520 530 540 550
pF1KSD LSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWAT
280 290 300 310 320 330
560 570 580 590 600 610
pF1KSD IEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSAMQRVETRPPCQ
:::::.
XP_016 IEQLCTSRVAGITDVYHHTWRCHLYAQLAGSSQVSMSTAPSGAPHTRPLQPCGPVSTARS
340 350 360 370 380 390
617 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:30:53 2016 done: Thu Nov 3 06:30:54 2016
Total Scan time: 10.090 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]