FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1465, 745 aa
  1>>>pF1KSDA1465 745 - 745 aa - 745 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2136+/-0.000841; mu= 8.9580+/- 0.051
 mean_var=202.4124+/-40.088, 0's: 0 Z-trim(114.4): 151  B-trim: 0 in 0/55
 Lambda= 0.090148
 statistics sampled from 14798 (14959) to 14798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.46), width:  16
 Scan time:  3.720

The best scores are:                                      opt bits E(32554)
CCDS10259.1 ISLR2 gene_id:57611|Hs108|chr15        ( 745) 5053 670.0 3.7e-192
CCDS10260.1 ISLR gene_id:3671|Hs108|chr15          ( 428) 1160 163.5 6.4e-40


>>CCDS10259.1 ISLR2 gene_id:57611|Hs108|chr15             (745 aa)
 initn: 5053 init1: 5053 opt: 5053  Z-score: 3563.2  bits: 670.0 E(32554): 3.7e-192
Smith-Waterman score: 5053; 100.0% identity (100.0% similar) in 745 aa overlap (1-745:1-745)

               10        20        30        40        50        60
pF1KSD MFPLRALWLVWALLGVAGSCPEPCACVDKYAHQFADCAYKELREVPEGLPANVTTLSLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MFPLRALWLVWALLGVAGSCPEPCACVDKYAHQFADCAYKELREVPEGLPANVTTLSLSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NKITVLRRGAFADVTQVTSLWLAHNEVRTVEPGALAVLSQLKNLDLSHNFISSFPWSDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NKITVLRRGAFADVTQVTSLWLAHNEVRTVEPGALAVLSQLKNLDLSHNFISSFPWSDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NLSALQLLKMNHNRLGSLPRDALGALPDLRSLRINNNRLRTLAPGTFDALSALSHLQLYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NLSALQLLKMNHNRLGSLPRDALGALPDLRSLRINNNRLRTLAPGTFDALSALSHLQLYH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NPFHCGCGLVWLQAWAASTRVSLPEPDSIACASPPALQGVPVYRLPALPCAPPSVHLSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NPFHCGCGLVWLQAWAASTRVSLPEPDSIACASPPALQGVPVYRLPALPCAPPSVHLSAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PPLEAPGTPLRAGLAFVLHCIADGHPTPRLQWQLQIPGGTVVLEPPVLSGEDDGVGAEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPLEAPGTPLRAGLAFVLHCIADGHPTPRLQWQLQIPGGTVVLEPPVLSGEDDGVGAEEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EGEGDGDLLTQTQAQTPTPAPAWPAPPATPRFLALANGSLLVPLLSAKEAGVYTCRAHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGEGDGDLLTQTQAQTPTPAPAWPAPPATPRFLALANGSLLVPLLSAKEAGVYTCRAHNE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LGANSTSIRVAVAATGPPKHAPGAGGEPDGQAPTSERKSTAKGRGNSVLPSKPEGKIKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGANSTSIRVAVAATGPPKHAPGAGGEPDGQAPTSERKSTAKGRGNSVLPSKPEGKIKGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD GLAKVSILGETETEPEEDTSEGEEAEDQILADPAEEQRCGNGDPSRYVSNHAFNQSAELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GLAKVSILGETETEPEEDTSEGEEAEDQILADPAEEQRCGNGDPSRYVSNHAFNQSAELK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PHVFELGVIALDVAEREARVQLTPLAARWGPGPGGAGGAPRPGRRPLRLLYLCPAGGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PHVFELGVIALDVAEREARVQLTPLAARWGPGPGGAGGAPRPGRRPLRLLYLCPAGGGAA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VQWSRVEEGVNAYWFRGLRPGTNYSVCLALAGEACHVQVVFSTKKELPSLLVIVAVSVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VQWSRVEEGVNAYWFRGLRPGTNYSVCLALAGEACHVQVVFSTKKELPSLLVIVAVSVFL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LVLATVPLLGAACCHLLAKHPGKPYRLILRPQAPDPMEKRIAADFDPRASYLESEKSYPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LVLATVPLLGAACCHLLAKHPGKPYRLILRPQAPDPMEKRIAADFDPRASYLESEKSYPA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD GGEAGGEEPEDVQGEGLDEDAEQGDPSGDLQREESLAACSLVESQSKANQEEFEAGSEYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGEAGGEEPEDVQGEGLDEDAEQGDPSGDLQREESLAACSLVESQSKANQEEFEAGSEYS
              670       680       690       700       710       720

              730       740     
pF1KSD DRLPLGAEAVNIAQEINGNYRQTAG
       :::::::::::::::::::::::::
CCDS10 DRLPLGAEAVNIAQEINGNYRQTAG
              730       740     

>>CCDS10260.1 ISLR gene_id:3671|Hs108|chr15               (428 aa)
 initn: 1284 init1: 1000 opt: 1160  Z-score: 830.1  bits: 163.5 E(32554): 6.4e-40
Smith-Waterman score: 1315; 49.8% identity (69.6% similar) in 448 aa overlap (1-442:1-403)

               10         20        30        40        50         
pF1KSD MFPLRALWLVWALL-GVAGSCPEPCACVDKYAHQFADCAYKELREVPEGLPANVTTLSLS
       :  :. ::  :::: :.: .::::: : .::. :.:::::..:. :: :.::::::::::
CCDS10 MQELHLLW--WALLLGLAQACPEPCDCGEKYGFQIADCAYRDLESVPPGFPANVTTLSLS
                 10        20        30        40        50        

      60        70        80        90       100       110         
pF1KSD ANKITVLRRGAFADVTQVTSLWLAHNEVRTVEPGALAVLSQLKNLDLSHNFISSFPWSDL
       ::..  : .::: .:  . ::::::::.:::  :::: ::.::.::::::.::.: ::::
CCDS10 ANRLPGLPEGAFREVPLLQSLWLAHNEIRTVAAGALASLSHLKSLDLSHNLISDFAWSDL
       60        70        80        90       100       110        

     120       130       140       150       160       170         
pF1KSD RNLSALQLLKMNHNRLGSLPRDALGALPDLRSLRINNNRLRTLAPGTFDALSALSHLQLY
       .::::::::::. :.:  .::::. .:  ::::..:.:::.::: :::  :.::::::. 
CCDS10 HNLSALQLLKMDSNELTFIPRDAFRSLRALRSLQLNHNRLHTLAEGTFTPLTALSHLQIN
      120       130       140       150       160       170        

     180       190       200       210       220       230         
pF1KSD HNPFHCGCGLVWLQAWAASTRVSLPEPDSIACASPPALQGVPVYRLPALPCAPPSVHLSA
       .::: : ::.:::..:: .: ::.:: :.:::.:: .:.:.:. ::: :::. :::.:: 
CCDS10 ENPFDCTCGIVWLKTWALTTAVSIPEQDNIACTSPHVLKGTPLSRLPPLPCSAPSVQLSY
      180       190       200       210       220       230        

     240       250       260       270       280       290         
pF1KSD EPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQWQLQIPGGTVVLEPPVLSGEDDGVGAEE
       .:  .  :. :: :....::: .::.:.:.:.:..:::.: : .  :       .::.  
CCDS10 QPSQD--GAELRPGFVLALHCDVDGQPAPQLHWHIQIPSGIVEITSP-------NVGT--
      240         250       260       270       280                

     300       310       320       330       340       350         
pF1KSD GEGEGDGDLLTQTQAQTPTPAPAWPAPPATPRFLALANGSLLVPLLSAKEAGVYTCRAHN
            ::  :           :. :.  . ::: :.::::::.: ..  : :.:.: : :
CCDS10 -----DGRAL-----------PGTPVASSQPRFQAFANGSLLIPDFGKLEEGTYSCLATN
            290                  300       310       320       330 

     360       370       380       390       400            410    
pF1KSD ELGANSTSIRVAVAATGPPKHAPGAGGEPDGQAPTSERKSTAKGRG-----NSVLPSKPE
       :::.  .:. ::.:.       :: ::: :  .   . :.. .:.:     : : :: ::
CCDS10 ELGSAESSVDVALAT-------PGEGGE-DTLGRRFHGKAV-EGKGCYTVDNEVQPSGPE
             340              350        360        370       380  

          420       430       440       450       460       470    
pF1KSD GKIKGQGLAKVSILGETETEPEEDTSEGEEAEDQILADPAEEQRCGNGDPSRYVSNHAFN
        ..       : :      .::  ..::                                
CCDS10 DNV-------VIIYLSRAGNPEAAVAEGVPGQLPPGLLLLGQSLLLFFFLTSF       
                   390       400       410       420               




745 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:23:44 2016 done: Thu Nov  3 06:23:45 2016
 Total Scan time:  3.720 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]