Result of FASTA (omim) for
pF1KSDA1439
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1439, 509 aa
1>>>pF1KSDA1439 509 - 509 aa - 509 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.3395+/-0.000395; mu= -18.4333+/- 0.025
mean_var=465.6811+/-94.886, 0's: 0 Z-trim(124.4): 46 B-trim: 0 in 0/62
Lambda= 0.059433
statistics sampled from 45976 (46022) to 45976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.54), width: 16
Scan time: 10.330
The best scores are: opt bits E(85289)
NP_001128145 (OMIM: 600727) nuclear factor 1 A-typ ( 509) 3501 314.3 5.2e-85
NP_001138984 (OMIM: 600727) nuclear factor 1 A-typ ( 554) 3501 314.4 5.6e-85
NP_001138983 (OMIM: 600727) nuclear factor 1 A-typ ( 501) 3436 308.8 2.4e-83
NP_005586 (OMIM: 600727) nuclear factor 1 A-type i ( 498) 3256 293.3 1.1e-78
XP_016856851 (OMIM: 600727) PREDICTED: nuclear fac ( 490) 3191 287.8 5.1e-77
XP_011539814 (OMIM: 600727) PREDICTED: nuclear fac ( 527) 2451 224.3 6.8e-58
XP_011539817 (OMIM: 600727) PREDICTED: nuclear fac ( 516) 2444 223.7 1e-57
XP_005259975 (OMIM: 164005,602535,614753) PREDICTE ( 502) 2405 220.4 1e-56
XP_011539816 (OMIM: 600727) PREDICTED: nuclear fac ( 519) 2386 218.7 3.2e-56
XP_005259977 (OMIM: 164005,602535,614753) PREDICTE ( 494) 2346 215.3 3.3e-55
NP_001257972 (OMIM: 164005,602535,614753) nuclear ( 510) 2346 215.3 3.4e-55
XP_011526342 (OMIM: 164005,602535,614753) PREDICTE ( 518) 2346 215.3 3.4e-55
NP_002492 (OMIM: 164005,602535,614753) nuclear fac ( 441) 2041 189.1 2.2e-47
XP_006716837 (OMIM: 600728) PREDICTED: nuclear fac ( 503) 2012 186.7 1.4e-46
NP_001231931 (OMIM: 600729) nuclear factor 1 C-typ ( 508) 1988 184.6 5.9e-46
NP_001257973 (OMIM: 164005,602535,614753) nuclear ( 433) 1982 184.1 7.4e-46
XP_005259976 (OMIM: 164005,602535,614753) PREDICTE ( 500) 1983 184.2 7.8e-46
XP_006716836 (OMIM: 600728) PREDICTED: nuclear fac ( 569) 1979 183.9 1.1e-45
XP_005251524 (OMIM: 600728) PREDICTED: nuclear fac ( 570) 1978 183.8 1.2e-45
XP_016882323 (OMIM: 600729) PREDICTED: nuclear fac ( 565) 1957 182.0 4e-45
NP_995315 (OMIM: 600729) nuclear factor 1 C-type i ( 499) 1935 180.1 1.3e-44
XP_005251525 (OMIM: 600728) PREDICTED: nuclear fac ( 566) 1916 178.5 4.6e-44
XP_006722822 (OMIM: 600729) PREDICTED: nuclear fac ( 556) 1904 177.4 9.3e-44
XP_006716838 (OMIM: 600728) PREDICTED: nuclear fac ( 498) 1873 174.8 5.4e-43
NP_001177666 (OMIM: 600728) nuclear factor 1 B-typ ( 494) 1857 173.4 1.4e-42
XP_005251526 (OMIM: 600728) PREDICTED: nuclear fac ( 561) 1857 173.4 1.5e-42
XP_005259621 (OMIM: 600729) PREDICTED: nuclear fac ( 511) 1841 172.0 3.7e-42
XP_016882326 (OMIM: 164005,602535,614753) PREDICTE ( 400) 1737 163.0 1.5e-39
XP_005251527 (OMIM: 600728) PREDICTED: nuclear fac ( 487) 1716 161.3 6e-39
XP_016870228 (OMIM: 600728) PREDICTED: nuclear fac ( 419) 1706 160.4 9.6e-39
NP_005587 (OMIM: 600728) nuclear factor 1 B-type i ( 420) 1705 160.3 1e-38
NP_005588 (OMIM: 600729) nuclear factor 1 C-type i ( 428) 1700 159.9 1.4e-38
NP_001231933 (OMIM: 600729) nuclear factor 1 C-typ ( 439) 1700 159.9 1.4e-38
XP_016882324 (OMIM: 600729) PREDICTED: nuclear fac ( 439) 1700 159.9 1.4e-38
XP_006722823 (OMIM: 164005,602535,614753) PREDICTE ( 459) 1679 158.1 5.1e-38
XP_005259974 (OMIM: 164005,602535,614753) PREDICTE ( 520) 1679 158.1 5.7e-38
NP_001177667 (OMIM: 600728) nuclear factor 1 B-typ ( 446) 1652 155.8 2.5e-37
XP_016882325 (OMIM: 600729) PREDICTED: nuclear fac ( 419) 1647 155.3 3.2e-37
NP_001231934 (OMIM: 600729) nuclear factor 1 C-typ ( 430) 1647 155.3 3.3e-37
XP_016870230 (OMIM: 600728) PREDICTED: nuclear fac ( 415) 1644 155.1 3.8e-37
XP_016870229 (OMIM: 600728) PREDICTED: nuclear fac ( 416) 1643 155.0 4e-37
XP_016856852 (OMIM: 600727) PREDICTED: nuclear fac ( 271) 1100 108.3 3e-23
XP_005251528 (OMIM: 600728) PREDICTED: nuclear fac ( 318) 610 66.3 1.5e-10
XP_016870231 (OMIM: 600728) PREDICTED: nuclear fac ( 308) 534 59.8 1.3e-08
NP_001269716 (OMIM: 600728) nuclear factor 1 B-typ ( 309) 529 59.4 1.8e-08
>>NP_001128145 (OMIM: 600727) nuclear factor 1 A-type is (509 aa)
initn: 3501 init1: 3501 opt: 3501 Z-score: 1647.2 bits: 314.3 E(85289): 5.2e-85
Smith-Waterman score: 3501; 100.0% identity (100.0% similar) in 509 aa overlap (1-509:1-509)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST
430 440 450 460 470 480
490 500
pF1KSD SPANRFVSVGPRDPSFVNIPQQTQSWYLG
:::::::::::::::::::::::::::::
NP_001 SPANRFVSVGPRDPSFVNIPQQTQSWYLG
490 500
>>NP_001138984 (OMIM: 600727) nuclear factor 1 A-type is (554 aa)
initn: 3501 init1: 3501 opt: 3501 Z-score: 1646.7 bits: 314.4 E(85289): 5.6e-85
Smith-Waterman score: 3501; 100.0% identity (100.0% similar) in 509 aa overlap (1-509:46-554)
10 20 30
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTW
::::::::::::::::::::::::::::::
NP_001 TRWPGGCGATWQSCPSPPPRRTRIPQRPAVMYSPLCLTQDEFHPFIEALLPHVRAFAYTW
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD FNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYRED
80 90 100 110 120 130
100 110 120 130 140 150
pF1KSD FVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KSD VKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGH
200 210 220 230 240 250
220 230 240 250 260 270
pF1KSD LGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTS
260 270 280 290 300 310
280 290 300 310 320 330
pF1KSD STSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSG
320 330 340 350 360 370
340 350 360 370 380 390
pF1KSD FSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY
380 390 400 410 420 430
400 410 420 430 440 450
pF1KSD HPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVP
440 450 460 470 480 490
460 470 480 490 500
pF1KSD LPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
500 510 520 530 540 550
>>NP_001138983 (OMIM: 600727) nuclear factor 1 A-type is (501 aa)
initn: 3436 init1: 3436 opt: 3436 Z-score: 1617.2 bits: 308.8 E(85289): 2.4e-83
Smith-Waterman score: 3436; 100.0% identity (100.0% similar) in 500 aa overlap (10-509:2-501)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
10 20 30 40 50
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
360 370 380 390 400 410
430 440 450 460 470 480
pF1KSD GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST
420 430 440 450 460 470
490 500
pF1KSD SPANRFVSVGPRDPSFVNIPQQTQSWYLG
:::::::::::::::::::::::::::::
NP_001 SPANRFVSVGPRDPSFVNIPQQTQSWYLG
480 490 500
>>NP_005586 (OMIM: 600727) nuclear factor 1 A-type isofo (498 aa)
initn: 3256 init1: 3256 opt: 3256 Z-score: 1533.8 bits: 293.3 E(85289): 1.1e-78
Smith-Waterman score: 3256; 96.6% identity (97.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPILVPGIK
430 440 450 460 470 480
490 500
pF1KSD SPANRFVSVGPRDPSFVNIPQQTQSWYLG
:.. : ::
NP_005 VAASHHPPDRPPDPFSTL
490
>>XP_016856851 (OMIM: 600727) PREDICTED: nuclear factor (490 aa)
initn: 3191 init1: 3191 opt: 3191 Z-score: 1503.8 bits: 287.8 E(85289): 5.1e-77
Smith-Waterman score: 3191; 96.5% identity (96.9% similar) in 485 aa overlap (10-494:2-486)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
10 20 30 40 50
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
360 370 380 390 400 410
430 440 450 460 470 480
pF1KSD GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPILVPGIK
420 430 440 450 460 470
490 500
pF1KSD SPANRFVSVGPRDPSFVNIPQQTQSWYLG
:.. : ::
XP_016 VAASHHPPDRPPDPFSTL
480 490
>>XP_011539814 (OMIM: 600727) PREDICTED: nuclear factor (527 aa)
initn: 3487 init1: 2416 opt: 2451 Z-score: 1160.4 bits: 224.3 E(85289): 6.8e-58
Smith-Waterman score: 3455; 96.6% identity (96.6% similar) in 527 aa overlap (1-509:1-527)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
250 260 270 280 290 300
310 320 330 340 350
pF1KSD PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPR--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPREF
310 320 330 340 350 360
360 370 380 390 400
pF1KSD ----------------ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQL
::::::::::::::::::::::::::::::::::::::::::::
XP_011 KMAPSILGSPFWKVYSASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQL
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD VCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTS
430 440 450 460 470 480
470 480 490 500
pF1KSD TEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
490 500 510 520
>>XP_011539817 (OMIM: 600727) PREDICTED: nuclear factor (516 aa)
initn: 3242 init1: 2416 opt: 2444 Z-score: 1157.3 bits: 223.7 E(85289): 1e-57
Smith-Waterman score: 3210; 93.2% identity (93.6% similar) in 512 aa overlap (1-494:1-512)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
250 260 270 280 290 300
310 320 330 340 350
pF1KSD PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPR--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPREF
310 320 330 340 350 360
360 370 380 390 400
pF1KSD ----------------ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQL
::::::::::::::::::::::::::::::::::::::::::::
XP_011 KMAPSILGSPFWKVYSASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQL
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD VCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTS
430 440 450 460 470 480
470 480 490 500
pF1KSD TEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
::::::::::: :.. : ::
XP_011 TEGGAASPTSPILVPGIKVAASHHPPDRPPDPFSTL
490 500 510
>>XP_005259975 (OMIM: 164005,602535,614753) PREDICTED: n (502 aa)
initn: 1750 init1: 1381 opt: 2405 Z-score: 1139.4 bits: 220.4 E(85289): 1e-56
Smith-Waterman score: 2405; 70.4% identity (85.5% similar) in 517 aa overlap (1-508:1-502)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
:::: :::::::::::::::::::::.:::::::::::::::::::::::.:::::::::
XP_005 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
:.::::.:::::::::::::::::::.:::::::.::::::::::::::::::.::::::
XP_005 LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
:::::::::::::::::::::::::::::: :::::::::::::::::::..::::::::
XP_005 RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::. .:.::.: .: .::::: : ::::.::: ::::::..:::::::::::.:...
XP_005 YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS
190 200 210 220 230
250 260 270 280 290
pF1KSD GPNFSLSDLESSSYYSMSPGAM-RRSLPSTSSTSSTKRLKSVED-EMDSPGEEPFYTGQG
::::::.:::: :::... .. :::. : :::.::: ::..: ::.:: .. :: : :
XP_005 GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD RSPGSGS-QSSGW-HEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITG
:::..:: ::::: ..:. : :..:::: : : : :: :: :::.: ::..:
XP_005 RSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAG
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD PR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHP---QETLKEFVQLVCPD-AGQQA
: .::.:: :.::::.. :::: .:::.::.:::: :..::::::.:: : .:: .
XP_005 VRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQAT
360 370 380 390 400 410
420 430 440 450 460 470
pF1KSD GQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPT
:: ::::.:::: . :: :::::.:::::::.::.: .:. .:.: .:
XP_005 GQ-----PNGSGQGKVPGSFLL------PPPPPVARPVPLPMPDSKSTSTAPDGAALTPP
420 430 440 450 460
480 490 500
pF1KSD SPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
::...: ..: ::::::.:::: .:.:::::.:::.:
XP_005 SPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
470 480 490 500
>>XP_011539816 (OMIM: 600727) PREDICTED: nuclear factor (519 aa)
initn: 3422 init1: 2351 opt: 2386 Z-score: 1130.4 bits: 218.7 E(85289): 3.2e-56
Smith-Waterman score: 3390; 96.5% identity (96.5% similar) in 518 aa overlap (10-509:2-519)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
10 20 30 40 50
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS
240 250 260 270 280 290
310 320 330 340 350
pF1KSD PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPR--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPREF
300 310 320 330 340 350
360 370 380 390 400
pF1KSD ----------------ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQL
::::::::::::::::::::::::::::::::::::::::::::
XP_011 KMAPSILGSPFWKVYSASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQL
360 370 380 390 400 410
410 420 430 440 450 460
pF1KSD VCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTS
420 430 440 450 460 470
470 480 490 500
pF1KSD TEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
480 490 500 510
>>XP_005259977 (OMIM: 164005,602535,614753) PREDICTED: n (494 aa)
initn: 1691 init1: 1322 opt: 2346 Z-score: 1112.1 bits: 215.3 E(85289): 3.3e-55
Smith-Waterman score: 2346; 70.1% identity (85.4% similar) in 508 aa overlap (10-508:2-494)
10 20 30 40 50 60
pF1KSD MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
:::::::::::::::::.:::::::::::::::::::::::.:::::::::
XP_005 MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL
10 20 30 40 50
70 80 90 100 110 120
pF1KSD LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
:.::::.:::::::::::::::::::.:::::::.::::::::::::::::::.::::::
XP_005 LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
:::::::::::::::::::::::::::::: :::::::::::::::::::..::::::::
XP_005 RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
::::. .:.::.: .: .::::: : ::::.::: ::::::..:::::::::::.:...
XP_005 YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS
180 190 200 210 220 230
250 260 270 280 290
pF1KSD GPNFSLSDLESSSYYSMSPGAM-RRSLPSTSSTSSTKRLKSVED-EMDSPGEEPFYTGQG
::::::.:::: :::... .. :::. : :::.::: ::..: ::.:: .. :: : :
XP_005 GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD RSPGSGS-QSSGW-HEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITG
:::..:: ::::: ..:. : :..:::: : : : :: :: :::.: ::..:
XP_005 RSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAG
300 310 320 330 340
360 370 380 390 400 410
pF1KSD PR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHP---QETLKEFVQLVCPD-AGQQA
: .::.:: :.::::.. :::: .:::.::.:::: :..::::::.:: : .:: .
XP_005 VRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQAT
350 360 370 380 390 400
420 430 440 450 460 470
pF1KSD GQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPT
:: ::::.:::: . :: :::::.:::::::.::.: .:. .:.: .:
XP_005 GQ-----PNGSGQGKVPGSFLL------PPPPPVARPVPLPMPDSKSTSTAPDGAALTPP
410 420 430 440 450
480 490 500
pF1KSD SPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG
::...: ..: ::::::.:::: .:.:::::.:::.:
XP_005 SPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
460 470 480 490
509 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:18:28 2016 done: Thu Nov 3 06:18:29 2016
Total Scan time: 10.330 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]