FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1383, 905 aa
  1>>>pF1KSDA1383 905 - 905 aa - 905 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7594+/-0.000827; mu= 10.7854+/- 0.050
 mean_var=133.3392+/-26.493, 0's: 0 Z-trim(112.3): 9  B-trim: 385 in 1/51
 Lambda= 0.111070
 statistics sampled from 13110 (13113) to 13110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.403), width:  16
 Scan time:  4.750

The best scores are:                                      opt bits E(32554)
CCDS44334.1 MAP10 gene_id:54627|Hs108|chr1         (1047) 5973 968.7       0


>>CCDS44334.1 MAP10 gene_id:54627|Hs108|chr1              (1047 aa)
 initn: 5973 init1: 5973 opt: 5973  Z-score: 5173.7  bits: 968.7 E(32554):    0
Smith-Waterman score: 5973; 100.0% identity (100.0% similar) in 905 aa overlap (1-905:143-1047)

                                             10        20        30
pF1KSD                               MAASLSERLFSLELLVDWVRLEARLLPSPA
                                     ::::::::::::::::::::::::::::::
CCDS44 RCLLLRFLVRPRGFSFSFAEPAAAFPGATAMAASLSERLFSLELLVDWVRLEARLLPSPA
            120       130       140       150       160       170  

               40        50        60        70        80        90
pF1KSD AAVEQEEEEEEKEQGEASSPRGLCPAVAFRLLDFPTLLVYPPDGPGAPAAEPWPGVIRFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAVEQEEEEEEKEQGEASSPRGLCPAVAFRLLDFPTLLVYPPDGPGAPAAEPWPGVIRFG
            180       190       200       210       220       230  

              100       110       120       130       140       150
pF1KSD RGKSCLFRLQPATLHCRLLRTPLATLLLQLPPGRPTPTPQLLGACDISLATAAHRVVGPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RGKSCLFRLQPATLHCRLLRTPLATLLLQLPPGRPTPTPQLLGACDISLATAAHRVVGPA
            240       250       260       270       280       290  

              160       170       180       190       200       210
pF1KSD ASGCSHRHRGRFPLHNRVGERTGDIALAYRLTDLGSRLLSQLERPLTFTRTGGGAEVSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASGCSHRHRGRFPLHNRVGERTGDIALAYRLTDLGSRLLSQLERPLTFTRTGGGAEVSPQ
            300       310       320       330       340       350  

              220       230       240       250       260       270
pF1KSD TQQERQQLQQPASQPSPKEADKPLGELEIPEAQKDLKEMVKSKAECDNVGSVENGKTNSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TQQERQQLQQPASQPSPKEADKPLGELEIPEAQKDLKEMVKSKAECDNVGSVENGKTNSV
            360       370       380       390       400       410  

              280       290       300       310       320       330
pF1KSD VTCSGAGNGRNVSSLNEEVTELDMETNIFCPPPLYYTNLTQEKPPPAQAKITIEPQMNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VTCSGAGNGRNVSSLNEEVTELDMETNIFCPPPLYYTNLTQEKPPPAQAKITIEPQMNAP
            420       430       440       450       460       470  

              340       350       360       370       380       390
pF1KSD EEMDDASPEKKRVNPPAHRSCLKHPSSAAHEHPPMLVNPPHIQNIGATNQTCQTEQNRIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEMDDASPEKKRVNPPAHRSCLKHPSSAAHEHPPMLVNPPHIQNIGATNQTCQTEQNRIN
            480       490       500       510       520       530  

              400       410       420       430       440       450
pF1KSD TIRQLPLLNALLVELSLLYDQPVTSPAHIHPHLAWLYRTEDKKSPESSAKSTCRSEAKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TIRQLPLLNALLVELSLLYDQPVTSPAHIHPHLAWLYRTEDKKSPESSAKSTCRSEAKKD
            540       550       560       570       580       590  

              460       470       480       490       500       510
pF1KSD KRSVGGCEKSVSLQYKKNQIENYKEDKYSEKSSGALHKRVPKGRLLYGLTNTLRLRLKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KRSVGGCEKSVSLQYKKNQIENYKEDKYSEKSSGALHKRVPKGRLLYGLTNTLRLRLKLT
            600       610       620       630       640       650  

              520       530       540       550       560       570
pF1KSD NPDMLVVHEKRELYRKRQSQMLGTKFRIPSSKVKLLSSAEQSQKPQLPEDKYLDSDASFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NPDMLVVHEKRELYRKRQSQMLGTKFRIPSSKVKLLSSAEQSQKPQLPEDKYLDSDASFT
            660       670       680       690       700       710  

              580       590       600       610       620       630
pF1KSD ENSDTSRQISGVFDEPSTSKETKLKYATEKKTVDCSKNRINNVSLEEVVSPANSIIPERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ENSDTSRQISGVFDEPSTSKETKLKYATEKKTVDCSKNRINNVSLEEVVSPANSIIPERL
            720       730       740       750       760       770  

              640       650       660       670       680       690
pF1KSD TPTNILGGNVEMKIQSPCVFQQDAVVDRIVDKEIDIRQVKTTDNDILMADISDKRTGKNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TPTNILGGNVEMKIQSPCVFQQDAVVDRIVDKEIDIRQVKTTDNDILMADISDKRTGKNS
            780       790       800       810       820       830  

              700       710       720       730       740       750
pF1KSD CYENISELKYSDDLSSPCYSEDFCTSEDTSRSFKAHDSSSRTENPKHSQYTSKSSDTGVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CYENISELKYSDDLSSPCYSEDFCTSEDTSRSFKAHDSSSRTENPKHSQYTSKSSDTGVS
            840       850       860       870       880       890  

              760       770       780       790       800       810
pF1KSD KKKNSSDRSSILSPPFSAGSPVHSYRKFHISKTQDKSLEEASSISASDLSSTHWTEQKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KKKNSSDRSSILSPPFSAGSPVHSYRKFHISKTQDKSLEEASSISASDLSSTHWTEQKEN
            900       910       920       930       940       950  

              820       830       840       850       860       870
pF1KSD QIDQNSMHNSEITKRAQDISVKTRSSWKSLEKSQSPQTSQVSSYLPSNVSELNVLDSSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QIDQNSMHNSEITKRAQDISVKTRSSWKSLEKSQSPQTSQVSSYLPSNVSELNVLDSSTS
            960       970       980       990      1000      1010  

              880       890       900     
pF1KSD DHFEEGNDDVGSLNISKQCKDICELVINKLPGYTM
       :::::::::::::::::::::::::::::::::::
CCDS44 DHFEEGNDDVGSLNISKQCKDICELVINKLPGYTM
           1020      1030      1040       




905 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:03:25 2016 done: Thu Nov  3 06:03:26 2016
 Total Scan time:  4.750 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]