FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1369, 630 aa
  1>>>pF1KSDA1369 630 - 630 aa - 630 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7551+/-0.00135; mu= -1.9814+/- 0.077
 mean_var=419.8212+/-98.131, 0's: 0 Z-trim(107.4): 77  B-trim: 571 in 1/51
 Lambda= 0.062595
 statistics sampled from 9484 (9525) to 9484 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.293), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS5345.1 EIF2AK1 gene_id:27102|Hs108|chr7        ( 630) 4138 389.4 7.8e-108


>>CCDS5345.1 EIF2AK1 gene_id:27102|Hs108|chr7             (630 aa)
 initn: 4138 init1: 4138 opt: 4138  Z-score: 2049.4  bits: 389.4 E(32554): 7.8e-108
Smith-Waterman score: 4138; 100.0% identity (100.0% similar) in 630 aa overlap (1-630:1-630)

               10        20        30        40        50        60
pF1KSD MQGGNSGVRKREEEGDGAGAVAAPPAIDFPAEGPDPEYDESDVPAEIQVLKEPLQQPTFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MQGGNSGVRKREEEGDGAGAVAAPPAIDFPAEGPDPEYDESDVPAEIQVLKEPLQQPTFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FAVANQLLLVSLLEHLSHVHEPNPLRSRQVFKLLCQTFIKMGLLSSFTCSDEFSSLRLHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FAVANQLLLVSLLEHLSHVHEPNPLRSRQVFKLLCQTFIKMGLLSSFTCSDEFSSLRLHH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NRAITHLMRSAKERVRQDPCEDISRIQKIRSREVALEAQTSRYLNEFEELAILGKGGYGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NRAITHLMRSAKERVRQDPCEDISRIQKIRSREVALEAQTSRYLNEFEELAILGKGGYGR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VYKVRNKLDGQYYAIKKILIKGATKTVCMKVLREVKVLAGLQHPNIVGYHTAWIEHVHVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VYKVRNKLDGQYYAIKKILIKGATKTVCMKVLREVKVLAGLQHPNIVGYHTAWIEHVHVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QPRADRAAIELPSLEVLSDQEEDREQCGVKNDESSSSSIIFAEPTPEKEKRFGESDTENQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QPRADRAAIELPSLEVLSDQEEDREQCGVKNDESSSSSIIFAEPTPEKEKRFGESDTENQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD NNKSVKYTTNLVIRESGELESTLELQENGLAGLSASSIVEQQLPLRRNSHLEESFTSTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NNKSVKYTTNLVIRESGELESTLELQENGLAGLSASSIVEQQLPLRRNSHLEESFTSTEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SSEENVNFLGQTEAQYHLMLHIQMQLCELSLWDWIVERNKRGREYVDESACPYVMANVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SSEENVNFLGQTEAQYHLMLHIQMQLCELSLWDWIVERNKRGREYVDESACPYVMANVAT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KIFQELVEGVFYIHNMGIVHRDLKPRNIFLHGPDQQVKIGDFGLACTDILQKNTDWTNRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KIFQELVEGVFYIHNMGIVHRDLKPRNIFLHGPDQQVKIGDFGLACTDILQKNTDWTNRN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD GKRTPTHTSRVGTCLYASPEQLEGSEYDAKSDMYSLGVVLLELFQPFGTEMERAEVLTGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GKRTPTHTSRVGTCLYASPEQLEGSEYDAKSDMYSLGVVLLELFQPFGTEMERAEVLTGL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RTGQLPESLRKRCPVQAKYIQHLTRRNSSQRPSAIQLLQSELFQNSGNVNLTLQMKIIEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RTGQLPESLRKRCPVQAKYIQHLTRRNSSQRPSAIQLLQSELFQNSGNVNLTLQMKIIEQ
              550       560       570       580       590       600

              610       620       630
pF1KSD EKEIAELKKQLNLLSQDKGVRDDGKDGGVG
       ::::::::::::::::::::::::::::::
CCDS53 EKEIAELKKQLNLLSQDKGVRDDGKDGGVG
              610       620       630




630 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:01:05 2016 done: Thu Nov  3 06:01:05 2016
 Total Scan time:  3.560 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]