Result of FASTA (ccds) for
pF1KSDA1337
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1337, 1392 aa
1>>>pF1KSDA1337 1392 - 1392 aa - 1392 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5421+/-0.000879; mu= 23.1404+/- 0.053
mean_var=85.2373+/-17.004, 0's: 0 Z-trim(107.8): 19 B-trim: 30 in 1/50
Lambda= 0.138918
statistics sampled from 9812 (9824) to 9812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.302), width: 16
Scan time: 5.860
The best scores are: opt bits E(32554)
CCDS41247.1 DISP3 gene_id:57540|Hs108|chr1 (1392) 9368 1888.3 0
>>CCDS41247.1 DISP3 gene_id:57540|Hs108|chr1 (1392 aa)
initn: 9368 init1: 9368 opt: 9368 Z-score: 10137.7 bits: 1888.3 E(32554): 0
Smith-Waterman score: 9368; 99.9% identity (100.0% similar) in 1392 aa overlap (1-1392:1-1392)
10 20 30 40 50 60
pF1KSD MDTEDDPLLQDVWLEEEQEEEEATGETFLGAQKPGPQPGAGGQCCWRHWPLASRPPASGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MDTEDDPLLQDVWLEEEQEEEEATGETFLGAQKPGPQPGAGGQCCWRHWPLASRPPASGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD WSTLGWAFTNPCCAGLVLFLGCSIPMALSAFMFLYYPPLDIDISYNAFEIRNHEASQRFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WSTLGWAFTNPCCAGLVLFLGCSIPMALSAFMFLYYPPLDIDISYNAFEIRNHEASQRFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ALTLALKSQFGSWGRNRRDLADFTSETLQRLISEQLQQLHLGNRSRQASRAPRVIPAASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ALTLALKSQFGSWGRNRRDLADFTSETLQRLISEQLQQLHLGNRSRQASRAPRVIPAASL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GSPGPYRDTSAAQKPTANRSGRLRRETPPLEDLAANQSEDPRNQRLSKNGRYQPSIPPHA
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGPGPYRDTSAAQKPTANRSGRLRRETPPLEDLAANQSEDPRNQRLSKNGRYQPSIPPHA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD AVAANQSRARRGASRWDYSRAYVSANTQTHAHWRIELIFLARGDAERNIFTSERLVTIHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AVAANQSRARRGASRWDYSRAYVSANTQTHAHWRIELIFLARGDAERNIFTSERLVTIHE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IERKIMDHPGFREFCWKPHEVLKDLPLGSYSYCSPPSSLMTYFFPTERGGKIYYDGMGQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IERKIMDHPGFREFCWKPHEVLKDLPLGSYSYCSPPSSLMTYFFPTERGGKIYYDGMGQD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LADIRGSLELAMTHPEFYWYVDEGLSADNLKSSLLRSEILFGAPLPNYYSVDDRWEEQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LADIRGSLELAMTHPEFYWYVDEGLSADNLKSSLLRSEILFGAPLPNYYSVDDRWEEQRA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KFQSFVVTYVAMLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KFQSFVVTYVAMLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYIL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD YRQATHLEDPQLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIVSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YRQATHLEDPQLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIVSC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD CWLAVLVTMPAALGLWSLYLAPLESSCQTSCHQNCSRKTSLHFPGDVFATPEQVGGSPAQ
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS41 CWLAVLVTMPAALGLWSLYLAPLESSCQTSCHQNCSRKTSLHFPGDVFAAPEQVGGSPAQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD GPIPYLDDDIPLLEVEEEPVSLELGDVSLVSVSPEGLQPASNTGSRGHLIVQLQELLHHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GPIPYLDDDIPLLEVEEEPVSLELGDVSLVSVSPEGLQPASNTGSRGHLIVQLQELLHHW
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD VLWSAVKSRWVIVGLFVSILILSLVFASRLRPASRAPLLFRPDTNIQVLLDLKYNLSAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLWSAVKSRWVIVGLFVSILILSLVFASRLRPASRAPLLFRPDTNIQVLLDLKYNLSAEG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ISCITCSGLFQEKPHSLQNNIRTSLEKKRRGSGVPWASRPEATLQDFPGTVYISKVKSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ISCITCSGLFQEKPHSLQNNIRTSLEKKRRGSGVPWASRPEATLQDFPGTVYISKVKSQG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD HPAVYRLSLNASLPAPWQAVSPGDGEVPSFQVYRAPFGNFTKKLTACMSTVGLLQAASPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HPAVYRLSLNASLPAPWQAVSPGDGEVPSFQVYRAPFGNFTKKLTACMSTVGLLQAASPS
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD RKWMLTTLACDAKRGWKFDFSFYVATKEQQHTRKLYFAQSHKPPFHGRVCMAPPGCLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RKWMLTTLACDAKRGWKFDFSFYVATKEQQHTRKLYFAQSHKPPFHGRVCMAPPGCLLSS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD SPDGPTKGFFFVPSEKVPKARLSATFGFNPCVNTGCGKPAVRPLVDTGAMVFVVFGIIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SPDGPTKGFFFVPSEKVPKARLSATFGFNPCVNTGCGKPAVRPLVDTGAMVFVVFGIIGV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD NRTRQVDNHVIGDPGSVVYDSSFDLFKEIGHLCHLCKAIAANSELVKPGGAQCLPSGYSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NRTRQVDNHVIGDPGSVVYDSSFDLFKEIGHLCHLCKAIAANSELVKPGGAQCLPSGYSI
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD SSFLQMLHPECKELPEPNLLPGQLSHGAVGVREGRVQWISMAFESTTYKGKSSFQTYSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSFLQMLHPECKELPEPNLLPGQLSHGAVGVREGRVQWISMAFESTTYKGKSSFQTYSDY
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD LRWESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVAAVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LRWESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVAAVAV
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD FTTHILLLLPVLLSILGIVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FTTHILLLLPVLLSILGIVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYL
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD LAGENLPPHQAEDARTQRQWRTLEAVRHVGVAIVSSALTTVIATVPLFFCIIAPFAKFGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LAGENLPPHQAEDARTQRQWRTLEAVRHVGVAIVSSALTTVIATVPLFFCIIAPFAKFGK
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD IVALNTGVSILYTLTVSTALLGIMAPSSFTRTRTSFLKALGAVLLAGALGLGACLVLLQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IVALNTGVSILYTLTVSTALLGIMAPSSFTRTRTSFLKALGAVLLAGALGLGACLVLLQS
1330 1340 1350 1360 1370 1380
1390
pF1KSD GYKIPLPAGASL
::::::::::::
CCDS41 GYKIPLPAGASL
1390
1392 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:52:35 2016 done: Thu Nov 3 05:52:36 2016
Total Scan time: 5.860 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]