Result of FASTA (omim) for
pF1KSDA1293
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1293, 419 aa
1>>>pF1KSDA1293 419 - 419 aa - 419 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0915+/-0.00041; mu= 18.1477+/- 0.025
mean_var=63.5599+/-12.830, 0's: 0 Z-trim(111.5): 12 B-trim: 28 in 1/48
Lambda= 0.160873
statistics sampled from 20145 (20153) to 20145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.236), width: 16
Scan time: 8.680
The best scores are: opt bits E(85289)
NP_001995 (OMIM: 134629,616631) farnesyl pyrophosp ( 419) 2841 668.4 9.5e-192
NP_001129293 (OMIM: 134629,616631) farnesyl pyroph ( 419) 2841 668.4 9.5e-192
XP_005245019 (OMIM: 134629,616631) PREDICTED: farn ( 353) 2339 551.8 9.8e-157
XP_005245020 (OMIM: 134629,616631) PREDICTED: farn ( 353) 2339 551.8 9.8e-157
NP_001229753 (OMIM: 134629,616631) farnesyl pyroph ( 353) 2339 551.8 9.8e-157
NP_001129294 (OMIM: 134629,616631) farnesyl pyroph ( 353) 2339 551.8 9.8e-157
NP_001229754 (OMIM: 134629,616631) farnesyl pyroph ( 248) 1641 389.7 4.3e-108
>>NP_001995 (OMIM: 134629,616631) farnesyl pyrophosphate (419 aa)
initn: 2841 init1: 2841 opt: 2841 Z-score: 3563.4 bits: 668.4 E(85289): 9.5e-192
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)
10 20 30 40 50 60
pF1KSD MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
310 320 330 340 350 360
370 380 390 400 410
pF1KSD AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
370 380 390 400 410
>>NP_001129293 (OMIM: 134629,616631) farnesyl pyrophosph (419 aa)
initn: 2841 init1: 2841 opt: 2841 Z-score: 3563.4 bits: 668.4 E(85289): 9.5e-192
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)
10 20 30 40 50 60
pF1KSD MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
310 320 330 340 350 360
370 380 390 400 410
pF1KSD AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
370 380 390 400 410
>>XP_005245019 (OMIM: 134629,616631) PREDICTED: farnesyl (353 aa)
initn: 2339 init1: 2339 opt: 2339 Z-score: 2934.9 bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)
40 50 60 70 80 90
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
::::::::::::::::::::::::::::::
XP_005 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
10 20 30
100 110 120 130 140 150
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
280 290 300 310 320 330
400 410
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
:::::::::::::::::::::::
XP_005 QYAAPLPPAVFLGLARKIYKRRK
340 350
>>XP_005245020 (OMIM: 134629,616631) PREDICTED: farnesyl (353 aa)
initn: 2339 init1: 2339 opt: 2339 Z-score: 2934.9 bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)
40 50 60 70 80 90
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
::::::::::::::::::::::::::::::
XP_005 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
10 20 30
100 110 120 130 140 150
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
280 290 300 310 320 330
400 410
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
:::::::::::::::::::::::
XP_005 QYAAPLPPAVFLGLARKIYKRRK
340 350
>>NP_001229753 (OMIM: 134629,616631) farnesyl pyrophosph (353 aa)
initn: 2339 init1: 2339 opt: 2339 Z-score: 2934.9 bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)
40 50 60 70 80 90
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
::::::::::::::::::::::::::::::
NP_001 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
10 20 30
100 110 120 130 140 150
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
280 290 300 310 320 330
400 410
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
:::::::::::::::::::::::
NP_001 QYAAPLPPAVFLGLARKIYKRRK
340 350
>>NP_001129294 (OMIM: 134629,616631) farnesyl pyrophosph (353 aa)
initn: 2339 init1: 2339 opt: 2339 Z-score: 2934.9 bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)
40 50 60 70 80 90
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
::::::::::::::::::::::::::::::
NP_001 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
10 20 30
100 110 120 130 140 150
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
280 290 300 310 320 330
400 410
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
:::::::::::::::::::::::
NP_001 QYAAPLPPAVFLGLARKIYKRRK
340 350
>>NP_001229754 (OMIM: 134629,616631) farnesyl pyrophosph (248 aa)
initn: 1641 init1: 1641 opt: 1641 Z-score: 2061.6 bits: 389.7 E(85289): 4.3e-108
Smith-Waterman score: 1641; 100.0% identity (100.0% similar) in 248 aa overlap (172-419:1-248)
150 160 170 180 190 200
pF1KSD KQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLL
::::::::::::::::::::::::::::::
NP_001 MDSSLTRRGQICWYQKPGVGLDAINDANLL
10 20 30
210 220 230 240 250 260
pF1KSD EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKS
40 50 60 70 80 90
270 280 290 300 310 320
pF1KSD IVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVT
100 110 120 130 140 150
330 340 350 360 370 380
pF1KSD GKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFL
160 170 180 190 200 210
390 400 410
pF1KSD QYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
::::::::::::::::::::::::::::::::::::::
NP_001 QYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
220 230 240
419 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:47:10 2016 done: Thu Nov 3 05:47:11 2016
Total Scan time: 8.680 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]