FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1293, 419 aa
  1>>>pF1KSDA1293 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3983+/-0.000936; mu= 16.1578+/- 0.056
 mean_var=60.3567+/-12.181, 0's: 0 Z-trim(104.6): 19  B-trim: 0 in 0/50
 Lambda= 0.165087
 statistics sampled from 7986 (7992) to 7986 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS1110.1 FDPS gene_id:2224|Hs108|chr1            ( 419) 2841 685.3 2.9e-197
CCDS44241.1 FDPS gene_id:2224|Hs108|chr1           ( 353) 2339 565.7 2.4e-161
CCDS72940.1 FDPS gene_id:2224|Hs108|chr1           ( 248) 1641 399.4  2e-111


>>CCDS1110.1 FDPS gene_id:2224|Hs108|chr1                 (419 aa)
 initn: 2841 init1: 2841 opt: 2841  Z-score: 3655.1  bits: 685.3 E(32554): 2.9e-197
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KSD MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KSD AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
              370       380       390       400       410         

>>CCDS44241.1 FDPS gene_id:2224|Hs108|chr1                (353 aa)
 initn: 2339 init1: 2339 opt: 2339  Z-score: 3010.1  bits: 565.7 E(32554): 2.4e-161
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)

         40        50        60        70        80        90      
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                     ::::::::::::::::::::::::::::::
CCDS44                               MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                             10        20        30

        100       110       120       130       140       150      
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
               40        50        60        70        80        90

        160       170       180       190       200       210      
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
              100       110       120       130       140       150

        220       230       240       250       260       270      
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
              160       170       180       190       200       210

        280       290       300       310       320       330      
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
              220       230       240       250       260       270

        340       350       360       370       380       390      
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
              280       290       300       310       320       330

        400       410         
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::
CCDS44 QYAAPLPPAVFLGLARKIYKRRK
              340       350   

>>CCDS72940.1 FDPS gene_id:2224|Hs108|chr1                (248 aa)
 initn: 1641 init1: 1641 opt: 1641  Z-score: 2114.1  bits: 399.4 E(32554): 2e-111
Smith-Waterman score: 1641; 100.0% identity (100.0% similar) in 248 aa overlap (172-419:1-248)

             150       160       170       180       190       200 
pF1KSD KQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLL
                                     ::::::::::::::::::::::::::::::
CCDS72                               MDSSLTRRGQICWYQKPGVGLDAINDANLL
                                             10        20        30

             210       220       230       240       250       260 
pF1KSD EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKS
               40        50        60        70        80        90

             270       280       290       300       310       320 
pF1KSD IVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 IVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVT
              100       110       120       130       140       150

             330       340       350       360       370       380 
pF1KSD GKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFL
              160       170       180       190       200       210

             390       400       410         
pF1KSD QYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
       ::::::::::::::::::::::::::::::::::::::
CCDS72 QYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
              220       230       240        




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:47:09 2016 done: Thu Nov  3 05:47:10 2016
 Total Scan time:  2.870 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]