FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1284, 942 aa
  1>>>pF1KSDA1284 942 - 942 aa - 942 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5689+/- 0.001; mu= 14.9099+/- 0.061
 mean_var=95.9874+/-18.830, 0's: 0 Z-trim(106.7): 29  B-trim: 0 in 0/51
 Lambda= 0.130908
 statistics sampled from 9104 (9108) to 9104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.28), width:  16
 Scan time:  4.770

The best scores are:                                      opt bits E(32554)
CCDS34061.1 INTU gene_id:27152|Hs108|chr4          ( 942) 6265 1194.3       0


>>CCDS34061.1 INTU gene_id:27152|Hs108|chr4               (942 aa)
 initn: 6265 init1: 6265 opt: 6265  Z-score: 6393.4  bits: 1194.3 E(32554):    0
Smith-Waterman score: 6265; 100.0% identity (100.0% similar) in 942 aa overlap (1-942:1-942)

               10        20        30        40        50        60
pF1KSD MASVASCDSRPSSDELPGDPSSQEEDEDYDFEDRVSDSGSYSSASSDYDDLEPEWLDSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MASVASCDSRPSSDELPGDPSSQEEDEDYDFEDRVSDSGSYSSASSDYDDLEPEWLDSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KNGELFYLELSEDEEESLLPETPTVNHVRFSENEIIIEDDYKERKKYEPKLKQFTKILRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KNGELFYLELSEDEEESLLPETPTVNHVRFSENEIIIEDDYKERKKYEPKLKQFTKILRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KRLLPKRCNKKNSNDNGPVSILKHQSNQKTGVIVQQRYKDVNVYVNPKKLTVIKAKEQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KRLLPKRCNKKNSNDNGPVSILKHQSNQKTGVIVQQRYKDVNVYVNPKKLTVIKAKEQLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLEVLVGIIHQTKWSWRRTGKQGDGERLVVHGLLPGGSAMKSGQVLIGDVLVAVNDVDVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLEVLVGIIHQTKWSWRRTGKQGDGERLVVHGLLPGGSAMKSGQVLIGDVLVAVNDVDVT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TENIERVLSCIPGPMQVKLTFENAYDVKRETSHPRQKKTQSNTSDLVKLLWGEEVEGIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TENIERVLSCIPGPMQVKLTFENAYDVKRETSHPRQKKTQSNTSDLVKLLWGEEVEGIQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SGLNTPHIIMYLTLQLDSETSKEEQEILYHYPMSEASQKLKSVRGIFLTLCDMLENVTGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGLNTPHIIMYLTLQLDSETSKEEQEILYHYPMSEASQKLKSVRGIFLTLCDMLENVTGT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QVTSSSLLLNGKQIHVAYWKESDKLLLIGLPAEEVPLPRLRNMIENVIQTLKFMYGSLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QVTSSSLLLNGKQIHVAYWKESDKLLLIGLPAEEVPLPRLRNMIENVIQTLKFMYGSLDS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AFCQIENVPRLDHFFNLFFQRALQPAKLHSSASPSAQQYDASSAVLLDNLPGVRWLTLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AFCQIENVPRLDHFFNLFFQRALQPAKLHSSASPSAQQYDASSAVLLDNLPGVRWLTLPL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EIKMELDMALSDLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EIKMELDMALSDLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD YCRHYCLLPLAAKQRIGQLIIWREVFPQHHLRPLADSSTEVFPEPEGRYFLLVVGLKHYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YCRHYCLLPLAAKQRIGQLIIWREVFPQHHLRPLADSSTEVFPEPEGRYFLLVVGLKHYM
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LCVLLEAGGCASKAIGSPGPDCVYVDQVKTTLHQLDGVDSRIDERLASSPVPCLSCADWF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LCVLLEAGGCASKAIGSPGPDCVYVDQVKTTLHQLDGVDSRIDERLASSPVPCLSCADWF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD LTGSREKTDSLTTSPILSRLQGTSKVATSPTCRRTLFGDYSLKTRKPSPSCSSGGSDNGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LTGSREKTDSLTTSPILSRLQGTSKVATSPTCRRTLFGDYSLKTRKPSPSCSSGGSDNGC
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD EGGEDDGFSPHTTPDAVRKQRESQGSDGLEESGTLLKVTKKKSTLPNPFHLGNLKKDLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EGGEDDGFSPHTTPDAVRKQRESQGSDGLEESGTLLKVTKKKSTLPNPFHLGNLKKDLPE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD KELEIYNTVKLTSGPENTLFHYVALETVQGIFITPTLEEVAQLSGSIHPQLIKNFHQCCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KELEIYNTVKLTSGPENTLFHYVALETVQGIFITPTLEEVAQLSGSIHPQLIKNFHQCCL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD SIRAVFQQTLVEEKKKGLNSGDHSDSAKSVSSLNPVKEHGVLFECSPGNWTDQKKAPPVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SIRAVFQQTLVEEKKKGLNSGDHSDSAKSVSSLNPVKEHGVLFECSPGNWTDQKKAPPVM
              850       860       870       880       890       900

              910       920       930       940  
pF1KSD AYWVVGRLFLHPKPQELYVCFHDSVTEIAIEIAFKLFFGLTL
       ::::::::::::::::::::::::::::::::::::::::::
CCDS34 AYWVVGRLFLHPKPQELYVCFHDSVTEIAIEIAFKLFFGLTL
              910       920       930       940  




942 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:45:42 2016 done: Thu Nov  3 05:45:43 2016
 Total Scan time:  4.770 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]