FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1279, 621 aa
  1>>>pF1KSDA1279 621 - 621 aa - 621 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7081+/-0.000391; mu= 18.1227+/- 0.025
 mean_var=85.7209+/-17.313, 0's: 0 Z-trim(113.6): 16  B-trim: 258 in 1/52
 Lambda= 0.138526
 statistics sampled from 22962 (22971) to 22962 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.269), width:  16
 Scan time: 10.920

The best scores are:                                      opt bits E(85289)
NP_056449 (OMIM: 609367,609460) KIF1-binding prote ( 621) 4094 828.5       0
XP_016871556 (OMIM: 609367,609460) PREDICTED: KIF1 ( 355) 2320 473.8 4.4e-133


>>NP_056449 (OMIM: 609367,609460) KIF1-binding protein [  (621 aa)
 initn: 4094 init1: 4094 opt: 4094  Z-score: 4422.9  bits: 828.5 E(85289):    0
Smith-Waterman score: 4094; 99.8% identity (100.0% similar) in 621 aa overlap (1-621:1-621)

               10        20        30        40        50        60
pF1KSD MANVPWAEVCEKFQAALALSRVELHKNPEKEPYKSKYSARALLEEVKALLGPAPEDEDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MANVPWAEVCEKFQAALALSRVELHKNPEKEPYKSKYSARALLEEVKALLGPAPEDEDER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PEAEDSPGAGDHALGLPAEVVEPEGPVAQRAVRLAVIEFHLGVNHIDTEELSAGEEHLVK
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PEAEDGPGAGDHALGLPAEVVEPEGPVAQRAVRLAVIEFHLGVNHIDTEELSAGEEHLVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD CLRLLRRYRLSHDCISLCIQAQNNLGILWSEREEIETAQAYLESSEALYNQYMKEVGSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 CLRLLRRYRLSHDCISLCIQAQNNLGILWSEREEIETAQAYLESSEALYNQYMKEVGSPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LDPTERFLPEEEKLTEQERSKRFEKVYTHNLYYLAQVYQHLEMFEKAAHYCHSTLKRQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LDPTERFLPEEEKLTEQERSKRFEKVYTHNLYYLAQVYQHLEMFEKAAHYCHSTLKRQLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HNAYHPIEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKISATEDTPEAEGEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HNAYHPIEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKISATEDTPEAEGEVP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELYHQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSELRALRKKELDEEESIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ELYHQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSELRALRKKELDEEESIRK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KAVQFGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KAVQFGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD EVVQDHSALFKVLAFFETDMERRCKMHKRRIAMLEPLTVDLNPQYYLLVNRQIQFEIAHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EVVQDHSALFKVLAFFETDMERRCKMHKRRIAMLEPLTVDLNPQYYLLVNRQIQFEIAHA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD YYDMMDLKVAIADRLRDPDSHIVKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIGEDVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 YYDMMDLKVAIADRLRDPDSHIVKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIGEDVL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RPAMLAKFRVARLYGKIITADPKKELENLATSLEHYKFIVDYCEKHPEAAQEIEVELELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RPAMLAKFRVARLYGKIITADPKKELENLATSLEHYKFIVDYCEKHPEAAQEIEVELELS
              550       560       570       580       590       600

              610       620 
pF1KSD KEMVSLLPTKMERFRTKMALT
       :::::::::::::::::::::
NP_056 KEMVSLLPTKMERFRTKMALT
              610       620 

>>XP_016871556 (OMIM: 609367,609460) PREDICTED: KIF1-bin  (355 aa)
 initn: 2320 init1: 2320 opt: 2320  Z-score: 2510.2  bits: 473.8 E(85289): 4.4e-133
Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 355 aa overlap (267-621:1-355)

        240       250       260       270       280       290      
pF1KSD RQLEHNAYHPIEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKISATEDTPEAE
                                     ::::::::::::::::::::::::::::::
XP_016                               MEARHCLSAANVIFGQTGKISATEDTPEAE
                                             10        20        30

        300       310       320       330       340       350      
pF1KSD GEVPELYHQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSELRALRKKELDEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEVPELYHQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSELRALRKKELDEEE
               40        50        60        70        80        90

        360       370       380       390       400       410      
pF1KSD SIRKKAVQFGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SIRKKAVQFGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYV
              100       110       120       130       140       150

        420       430       440       450       460       470      
pF1KSD TDHIEVVQDHSALFKVLAFFETDMERRCKMHKRRIAMLEPLTVDLNPQYYLLVNRQIQFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDHIEVVQDHSALFKVLAFFETDMERRCKMHKRRIAMLEPLTVDLNPQYYLLVNRQIQFE
              160       170       180       190       200       210

        480       490       500       510       520       530      
pF1KSD IAHAYYDMMDLKVAIADRLRDPDSHIVKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAHAYYDMMDLKVAIADRLRDPDSHIVKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIG
              220       230       240       250       260       270

        540       550       560       570       580       590      
pF1KSD EDVLRPAMLAKFRVARLYGKIITADPKKELENLATSLEHYKFIVDYCEKHPEAAQEIEVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDVLRPAMLAKFRVARLYGKIITADPKKELENLATSLEHYKFIVDYCEKHPEAAQEIEVE
              280       290       300       310       320       330

        600       610       620 
pF1KSD LELSKEMVSLLPTKMERFRTKMALT
       :::::::::::::::::::::::::
XP_016 LELSKEMVSLLPTKMERFRTKMALT
              340       350     




621 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:44:09 2016 done: Thu Nov  3 05:44:11 2016
 Total Scan time: 10.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]