FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1279, 621 aa
  1>>>pF1KSDA1279 621 - 621 aa - 621 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7843+/-0.000937; mu= 17.5752+/- 0.057
 mean_var=86.3561+/-17.039, 0's: 0 Z-trim(106.7): 11  B-trim: 0 in 0/52
 Lambda= 0.138015
 statistics sampled from 9116 (9119) to 9116 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.28), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS7284.1 KIF1BP gene_id:26128|Hs108|chr10        ( 621) 4094 825.5       0


>>CCDS7284.1 KIF1BP gene_id:26128|Hs108|chr10             (621 aa)
 initn: 4094 init1: 4094 opt: 4094  Z-score: 4406.5  bits: 825.5 E(32554):    0
Smith-Waterman score: 4094; 99.8% identity (100.0% similar) in 621 aa overlap (1-621:1-621)

               10        20        30        40        50        60
pF1KSD MANVPWAEVCEKFQAALALSRVELHKNPEKEPYKSKYSARALLEEVKALLGPAPEDEDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MANVPWAEVCEKFQAALALSRVELHKNPEKEPYKSKYSARALLEEVKALLGPAPEDEDER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PEAEDSPGAGDHALGLPAEVVEPEGPVAQRAVRLAVIEFHLGVNHIDTEELSAGEEHLVK
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PEAEDGPGAGDHALGLPAEVVEPEGPVAQRAVRLAVIEFHLGVNHIDTEELSAGEEHLVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD CLRLLRRYRLSHDCISLCIQAQNNLGILWSEREEIETAQAYLESSEALYNQYMKEVGSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CLRLLRRYRLSHDCISLCIQAQNNLGILWSEREEIETAQAYLESSEALYNQYMKEVGSPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LDPTERFLPEEEKLTEQERSKRFEKVYTHNLYYLAQVYQHLEMFEKAAHYCHSTLKRQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LDPTERFLPEEEKLTEQERSKRFEKVYTHNLYYLAQVYQHLEMFEKAAHYCHSTLKRQLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HNAYHPIEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKISATEDTPEAEGEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HNAYHPIEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKISATEDTPEAEGEVP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELYHQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSELRALRKKELDEEESIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ELYHQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSELRALRKKELDEEESIRK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KAVQFGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KAVQFGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD EVVQDHSALFKVLAFFETDMERRCKMHKRRIAMLEPLTVDLNPQYYLLVNRQIQFEIAHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EVVQDHSALFKVLAFFETDMERRCKMHKRRIAMLEPLTVDLNPQYYLLVNRQIQFEIAHA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD YYDMMDLKVAIADRLRDPDSHIVKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIGEDVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 YYDMMDLKVAIADRLRDPDSHIVKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIGEDVL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RPAMLAKFRVARLYGKIITADPKKELENLATSLEHYKFIVDYCEKHPEAAQEIEVELELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RPAMLAKFRVARLYGKIITADPKKELENLATSLEHYKFIVDYCEKHPEAAQEIEVELELS
              550       560       570       580       590       600

              610       620 
pF1KSD KEMVSLLPTKMERFRTKMALT
       :::::::::::::::::::::
CCDS72 KEMVSLLPTKMERFRTKMALT
              610       620 




621 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:44:08 2016 done: Thu Nov  3 05:44:09 2016
 Total Scan time:  3.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]