Result of FASTA (ccds) for
pF1KSDA1276
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1276, 1060 aa
1>>>pF1KSDA1276 1060 - 1060 aa - 1060 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0545+/-0.00117; mu= -7.5642+/- 0.069
mean_var=476.1423+/-101.985, 0's: 0 Z-trim(112.6): 163 B-trim: 0 in 0/54
Lambda= 0.058777
statistics sampled from 13169 (13308) to 13169 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.409), width: 16
Scan time: 4.360
The best scores are: opt bits E(32554)
CCDS47033.1 FAM184B gene_id:27146|Hs108|chr4 (1060) 6816 593.7 6.8e-169
CCDS43499.1 FAM184A gene_id:79632|Hs108|chr6 (1140) 750 79.4 5e-14
>>CCDS47033.1 FAM184B gene_id:27146|Hs108|chr4 (1060 aa)
initn: 6816 init1: 6816 opt: 6816 Z-score: 3145.6 bits: 593.7 E(32554): 6.8e-169
Smith-Waterman score: 6816; 99.6% identity (99.8% similar) in 1060 aa overlap (1-1060:1-1060)
10 20 30 40 50 60
pF1KSD MASALNSKINPPGTCQGSKADGGAGWRMDCDPQMHVKMCKKIAQLTKVIYALNTRQDEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MASALNSKINPPGTCQGSKADGGAGWRMDCDPQMHVKMCKKIAQLTKVIYALNTRQDEAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ASMEALREAHQEELQNAVAETKARLLQEQGCAEEEALLQRIQALESALELQKRLTEEALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ASMEALREAHQEELQNAVAETKARLLQEQGCAEEEALLQRIQALESALELQKRLTEEALA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ESASCRLETKERELRVEAEHAERVLTLSREMLELKADYERRLQHLTSHEATPQGRLPQES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ESASCRLETKERELRVEAEHAERVLTLSREMLELKADYERRLQHLTSHEATPQGRLPQES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PETKSEPGQGPEMQEVLLEVQRLRVENQQLSKDYARKAEELQATYERENEAIRQAMQQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PETKSEPGQGPEMQEVLLEVQRLRVENQQLSKDYARKAEELQATYERENEAIRQAMQQSV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SQALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQHL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS47 SQALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD NDLEAGNLHPQQDQSCLKECPCMKGGTDMQTKKEASAETEYMKQQYEEDLRKIKHQTEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NDLEAGNLHPQQDQSCLKECPCMKGGTDMQTKKEASAETEYMKQQYEEDLRKIKHQTEEE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KKHLKDQLVKRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KKHLKDQLVKRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDPCLKLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDPCLKLDE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD QKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQHELQETTQQNHAMKAQLE
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS47 QKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQRELQETTQQNHAMKAQLE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD ASHQRALRMLEKARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ASHQRALRMLEKARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD RMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQQASSQCPGDSKDHIIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQQASSQCPGDSKDHIIA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD TEEWGGPGQAGSPPGAAGQGSGEGCGLWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQRR
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TEERGGPGQAGSPPGAAGQGSGEGCGLWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQRR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD FLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELKDSGEKPGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELKDSGEKPGKG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD ASRPEDLQLIGRLQTRLKEREDIIKQLTEERRFHYAAFPSAMSHRNRSFSFNPHPGYLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ASRPEDLQLIGRLQTRLKEREDIIKQLTEERRFHYAAFPSAMSHRNRSFSFNPHPGYLTP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD SMKKKKVEDVPSRVVSVPNLASYAKNFLSGDLSSRINAPPITTSPSLDPSPSCGRTYKPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SMKKKKVEDVPSRVVSVPNLASYAKNFLSGDLSSRINAPPITTSPSLDPSPSCGRTYKPN
970 980 990 1000 1010 1020
1030 1040 1050 1060
pF1KSD QSTDAKTATRTPDGETAQAKEAQQKQGSPHQEWFTKYFSF
:::::::::::::::::::::.::::::::::::::::::
CCDS47 QSTDAKTATRTPDGETAQAKEVQQKQGSPHQEWFTKYFSF
1030 1040 1050 1060
>>CCDS43499.1 FAM184A gene_id:79632|Hs108|chr6 (1140 aa)
initn: 1236 init1: 295 opt: 750 Z-score: 365.3 bits: 79.4 E(32554): 5e-14
Smith-Waterman score: 1161; 27.1% identity (59.5% similar) in 1112 aa overlap (51-1060:57-1140)
30 40 50 60 70 80
pF1KSD DGGAGWRMDCDPQMHVKMCKKIAQLTKVIYALNTRQDEAEASMEALREAHQEELQNAVAE
::::..:: :....::..::.::.:. .::
CCDS43 AQLAGHSMDYSQEMHLKMSKKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAE
30 40 50 60 70 80
90 100 110 120 130
pF1KSD TKARLLQEQGCAEEEALLQR-IQALESALELQKRLTEEALAESASCRLETKERELRVEAE
:. ..:: .. . :: :.: ::.:::.:: . .. ..::.: . . .... .: .::.
CCDS43 TREKILQYKSKVTEELDLRRKIQVLESSLEDHIKMKQQALTEFEAYKHRVEDMQLCAEAQ
90 100 110 120 130 140
140 150 160 170 180
pF1KSD HAERVLTLSREMLELKADYERRLQHL-------------------TSHEATPQGRLPQES
:..:..:.:::. :.. .:..:. . ..:. : : ...
CCDS43 HVQRIVTMSREVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQ
150 160 170 180 190 200
190 200 210 220 230
pF1KSD PETKS-EPGQ--GPEMQEVLLE-----VQRLRVENQQLSKDYARKAEELQATYERENEAI
.. : . :: . :.... .: ...::.: ..: .:: : .. :. :::: ...
CCDS43 DHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFYERELDTL
210 220 230 240 250 260
240 250 260 270 280 290
pF1KSD RQAMQQSVSQALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQK
... : ....: .:::.::::.:: ::. :. . ::. .:. . ..: ::
CCDS43 KRS-QLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQK
270 280 290 300 310 320
300 310 320 330
pF1KSD LK-------ERIQHLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECR-------
:. . .: :. :: .:.. . : . :.. .::.:..:.. :
CCDS43 LQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASH
330 340 350 360 370 380
340 350 360 370 380 390
pF1KSD -GTQQTDAMKTE-----LVSENKVLREE-NDLEAGNLHPQQDQSCLKECPCMKGGTDMQT
: :. : : : ::.. . :. ..:: .. . : : .. ..
CCDS43 IGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQI---LEL
390 400 410 420 430 440
400 410 420 430 440 450
pF1KSD KKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTVEIKSVRSSVE
.:... . ... ::..:.... . ::: .:.. : ::.:. :: . :..:.:..
CCDS43 EKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAI
450 460 470 480 490 500
460 470 480 490 500
pF1KSD AERKKLQREVEAQLEEVRKKSEKEIKQLEEE----KAALNVKLQNSLLEVLRLEEFIQQN
..:::: ..: : .. . . :.. .::..: : .:. ::... :. .:.......
CCDS43 RDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKS
510 520 530 540 550 560
510 520 530 540 550
pF1KSD KTRPTGAE------ESPQE-----LGRQHCSILETQDPCLKLD-ETSPRGEEYQDKLAA-
. .:: .. :: : . :. ::.: :... : . ..... .::
CCDS43 EQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAM
570 580 590 600 610 620
560 570 580 590
pF1KSD --EEGTSSDE--------------EE----RTKVLLKEGSDPQPPLGSLLKEKTSKIQRL
:: . :. .: : .. :.. : . ...::. : . .
CCDS43 KEEEKLKVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAA
630 640 650 660 670 680
600 610 620 630 640 650
pF1KSD EEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQHELQETTQQNHA
...::.. : :.: ..: :: :. . .:: :. ::..: .::.: .:..
CCDS43 RDSWQKKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQ
690 700 710 720 730 740
660 670 680 690 700 710
pF1KSD MKAQLEASHQRALRMLEKARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQE
. .:. .: :.. .:. ...: .: :..:... : :: ...:: ..... . .::
CCDS43 RHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHRESMEGFRIEMEQE
750 760 770 780 790 800
720 730 740 750 760
pF1KSD LQEERERMQAQQALLLESLRQELSEQQAAC-----SGHQKDLEALQAELRA---LGRQQA
:: : ... . .: :::.::..:.:: .:...: : . ::. ..:.:
CCDS43 LQTLRFELEDEGKAMLASLRSELNHQHAAAIDLLRHNHHQELAAAKMELERSIDISRRQ-
810 820 830 840 850 860
770 780 790 800 810 820
pF1KSD SSQCPGDSKDHIIATEEWGGPGQAGSPPGAAGQGSGEGCGLWEENAQLQDAVRRLRAEVE
::.:: . . . . : .: .:.. . : :.:
CCDS43 -------SKEHICRITDLQEELR---------HREHHISELDKEVQHLHENISALTKELE
870 880 890 900
830 840 850 860 870 880
pF1KSD QHQQEAQKLRD----QRRFLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQAR
. .: ..:. : :. :. . . .:.... .: .: . : :::.... :.
CCDS43 FKGKEILRIRSESNQQIRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEI
910 920 930 940 950 960
890 900 910 920 930 940
pF1KSD LAALEAELKDSGEKPGKGASRPEDLQLIGRLQTRLKEREDIIKQLTEERRFHYAAFPSAM
:::.. :.. :: :.:::.:.: .:.. : ::..:::.: :. .:. . .
CCDS43 NAALQVSLEEMEEKYLMRESKPEDIQMITELKAMLTERDQIIKKLIEDNKFYQLELVNRE
970 980 990 1000 1010 1020
950 960 970 980 990 1000
pF1KSD SHRNRSFSFNPHPGYLTPSMKKKKVED-VPS-RVVSVPNLASYAKNFLSGDLSSRINAPP
.. :. :. .: : ..: :.:: .: :. : ::::::.. .. ... .:.. :
CCDS43 TNFNKVFNSSPTVGVINPLAKQKKKNDKSPTNRFVSVPNLSALESGGVGNGHPNRLD--P
1030 1040 1050 1060 1070 1080
1010 1020 1030 1040 1050
pF1KSD ITTSPSLDPSPSCGRTY-KPNQSTDAKTATRTPDGETAQAKEAQQKQGSPH-QEWFTKYF
: .:: : . .. .: :: .: ::.. . . .:. ::::..::
CCDS43 IPNSPVHDIEFNSSKPLPQPVPPKGPKTFL-SP----AQSEASPVASPDPQRQEWFARYF
1090 1100 1110 1120 1130
1060
pF1KSD SF
.:
CCDS43 TF
1140
1060 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:42:44 2016 done: Thu Nov 3 05:42:44 2016
Total Scan time: 4.360 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]