FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1274, 856 aa
  1>>>pF1KSDA1274 856 - 856 aa - 856 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6379+/-0.000802; mu= 19.5076+/- 0.049
 mean_var=76.6482+/-15.531, 0's: 0 Z-trim(107.7): 9  B-trim: 516 in 1/52
 Lambda= 0.146495
 statistics sampled from 9749 (9755) to 9749 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.3), width:  16
 Scan time:  4.550

The best scores are:                                      opt bits E(32554)
CCDS31215.1 PALD1 gene_id:27143|Hs108|chr10        ( 856) 5765 1228.3       0


>>CCDS31215.1 PALD1 gene_id:27143|Hs108|chr10             (856 aa)
 initn: 5765 init1: 5765 opt: 5765  Z-score: 6578.5  bits: 1228.3 E(32554):    0
Smith-Waterman score: 5765; 99.9% identity (99.9% similar) in 856 aa overlap (1-856:1-856)

               10        20        30        40        50        60
pF1KSD MGTTASTAQQTVSAGTPFEGLQGSGTMDSRHSVSIHSFQSTSLHNSKAKSIIPNKVAPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGTTASTAQQTVSAGTPFEGLQGSGTMDSRHSVSIHSFQSTSLHNSKAKSIIPNKVAPVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ITYNCKEEFQIHDELLKAHYTLGRLSDNTPEHYLVQGRYFLVRDVTEKMDVLGTVGSCGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ITYNCKEEFQIHDELLKAHYTLGRLSDNTPEHYLVQGRYFLVRDVTEKMDVLGTVGSCGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PNFRQVQGGLTVFGMGQPSLLGFRRVLQKLQKDGHRECVIFCVREEPVLFLRADEDFVSY
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS31 PNFRQVQGGLTVFGMGQPSLSGFRRVLQKLQKDGHRECVIFCVREEPVLFLRADEDFVSY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TPRDKQNLHENLQGLGPGVRVESLELAIRKEIHDFAQLSENTYHVYHNTEDLWGEPHAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TPRDKQNLHENLQGLGPGVRVESLELAIRKEIHDFAQLSENTYHVYHNTEDLWGEPHAVA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IHGEDDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQLDAFVSVLRETPSLLQLRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IHGEDDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQLDAFVSVLRETPSLLQLRD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AHGPPPALVFSCQMGVGRTNLGMVLGTLILLHRSGTTSQPEAAPTQAKPLPMEQFQVIQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AHGPPPALVFSCQMGVGRTNLGMVLGTLILLHRSGTTSQPEAAPTQAKPLPMEQFQVIQS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FLRMVPQGRRMVEEVDRAITACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FLRMVPQGRRMVEEVDRAITACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ALWSLERYFYLILFNYYLHEQYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALWSLERYFYLILFNYYLHEQYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RGSLREDDLVSPDALSTVREMDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RGSLREDDLVSPDALSTVREMDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD KVVWVSLREEAVLECDGHTYSLRWPGPPVAPDQLETLEAQLKAHLSEPPPGKEGPLTYRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KVVWVSLREEAVLECDGHTYSLRWPGPPVAPDQLETLEAQLKAHLSEPPPGKEGPLTYRF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QTCLTMQEVFSQHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTGFVFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QTCLTMQEVFSQHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTGFVFS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD CLSGQGRTTTAMVVAVLAFWHIQGFPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CLSGQGRTTTAMVVAVLAFWHIQGFPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGH
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD RVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQEMRRLQLRSLQYLERYVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQEMRRLQLRSLQYLERYVC
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD LILFNAYLHLEKADSWQRPFSTWMQEVASKAGIYEILNELGFPELESGEDQPFSRLRYRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LILFNAYLHLEKADSWQRPFSTWMQEVASKAGIYEILNELGFPELESGEDQPFSRLRYRW
              790       800       810       820       830       840

              850      
pF1KSD QEQSCSLEPSAPEDLL
       ::::::::::::::::
CCDS31 QEQSCSLEPSAPEDLL
              850      




856 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:42:01 2016 done: Thu Nov  3 05:42:01 2016
 Total Scan time:  4.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]