FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1252, 568 aa
  1>>>pF1KSDA1252 568 - 568 aa - 568 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6492+/-0.00113; mu= 16.5086+/- 0.067
 mean_var=63.2702+/-12.483, 0's: 0 Z-trim(102.3): 17  B-trim: 0 in 0/49
 Lambda= 0.161241
 statistics sampled from 6903 (6909) to 6903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.212), width:  16
 Scan time:  3.160

The best scores are:                                      opt bits E(32554)
CCDS31216.1 SGPL1 gene_id:8879|Hs108|chr10         ( 568) 3795 892.0       0


>>CCDS31216.1 SGPL1 gene_id:8879|Hs108|chr10              (568 aa)
 initn: 3795 init1: 3795 opt: 3795  Z-score: 4767.3  bits: 892.0 E(32554):    0
Smith-Waterman score: 3795; 100.0% identity (100.0% similar) in 568 aa overlap (1-568:1-568)

               10        20        30        40        50        60
pF1KSD MPSTDLLMLKAFEPYLEILEVYSTKAKNYVNGHCTKYEPWQLIAWSVVWTLLIVWGYEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPSTDLLMLKAFEPYLEILEVYSTKAKNYVNGHCTKYEPWQLIAWSVVWTLLIVWGYEFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FQPESLWSRFKKKCFKLTRKMPIIGRKIQDKLNKTKDDISKNMSFLKVDKEYVKALPSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FQPESLWSRFKKKCFKLTRKMPIIGRKIQDKLNKTKDDISKNMSFLKVDKEYVKALPSQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSSSAVLEKLKEYSSMDAFWQEGRASGTVYSGEEKLTELLVKAYGDFAWSNPLHPDIFPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LSSSAVLEKLKEYSSMDAFWQEGRASGTVYSGEEKLTELLVKAYGDFAWSNPLHPDIFPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LRKIEAEIVRIACSLFNGGPDSCGCVTSGGTESILMACKAYRDLAFEKGIKTPEIVAPQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LRKIEAEIVRIACSLFNGGPDSCGCVTSGGTESILMACKAYRDLAFEKGIKTPEIVAPQS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD AHAAFNKAASYFGMKIVRVPLTKMMEVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AHAAFNKAASYFGMKIVRVPLTKMMEVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VAKLAVKYKIPLHVDACLGGFLIVFMEKAGYPLEHPFDFRVKGVTSISADTHKYGYAPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VAKLAVKYKIPLHVDACLGGFLIVFMEKAGYPLEHPFDFRVKGVTSISADTHKYGYAPKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SSLVLYSDKKYRNYQFFVDTDWQGGIYASPTIAGSRPGGISAACWAALMHFGENGYVEAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSLVLYSDKKYRNYQFFVDTDWQGGIYASPTIAGSRPGGISAACWAALMHFGENGYVEAT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLNQLQFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLNQLQFP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDRNMVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDRNMVAE
              490       500       510       520       530       540

              550       560        
pF1KSD LSSVFLDSLYSTDTVTQGSQMNGSPKPH
       ::::::::::::::::::::::::::::
CCDS31 LSSVFLDSLYSTDTVTQGSQMNGSPKPH
              550       560        




568 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:33:45 2016 done: Thu Nov  3 05:33:45 2016
 Total Scan time:  3.160 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]