Result of FASTA (ccds) for
pF1KSDA1244
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1244, 1839 aa
1>>>pF1KSDA1244 1839 - 1839 aa - 1839 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1683+/- 0.001; mu= 20.3440+/- 0.060
mean_var=87.8621+/-17.284, 0's: 0 Z-trim(105.5): 18 B-trim: 0 in 0/52
Lambda= 0.136828
statistics sampled from 8449 (8453) to 8449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.26), width: 16
Scan time: 7.010
The best scores are: opt bits E(32554)
CCDS5189.2 ARFGEF3 gene_id:57221|Hs108|chr6 (2177) 12271 2433.6 0
>>CCDS5189.2 ARFGEF3 gene_id:57221|Hs108|chr6 (2177 aa)
initn: 12271 init1: 12271 opt: 12271 Z-score: 13079.4 bits: 2433.6 E(32554): 0
Smith-Waterman score: 12271; 100.0% identity (100.0% similar) in 1839 aa overlap (1-1839:339-2177)
10 20 30
pF1KSD MKPVLQSLYHRVLLYPPPQHRVEAIKIMKE
::::::::::::::::::::::::::::::
CCDS51 CTAPALSGPVARTIYYIAAELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKE
310 320 330 340 350 360
40 50 60 70 80 90
pF1KSD ILGSPQRLCDLAGPSSTESESRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 ILGSPQRLCDLAGPSSTESESRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVS
370 380 390 400 410 420
100 110 120 130 140 150
pF1KSD CVCTLLGALDELSQGKGLSEGQVQLLLLRLEELKDGAEWSRDSMEINEADFRWQRRVLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 CVCTLLGALDELSQGKGLSEGQVQLLLLRLEELKDGAEWSRDSMEINEADFRWQRRVLSS
430 440 450 460 470 480
160 170 180 190 200 210
pF1KSD EHTPWESGNERSLDISISVTTDTGQTTLEGELGQTTPEDHSGNHKNSLKSPAIPEGKETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 EHTPWESGNERSLDISISVTTDTGQTTLEGELGQTTPEDHSGNHKNSLKSPAIPEGKETL
490 500 510 520 530 540
220 230 240 250 260 270
pF1KSD SKVLETEAVDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SKVLETEAVDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEF
550 560 570 580 590 600
280 290 300 310 320 330
pF1KSD DSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDCLGHRSLRTAALSLKLLKNQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 DSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDCLGHRSLRTAALSLKLLKNQEA
610 620 630 640 650 660
340 350 360 370 380 390
pF1KSD DQHSARLFIQSLEGLLPRLLSLSNVEEVDTALQNFASTFCSGMMHSPGFDGNSSLSFQML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 DQHSARLFIQSLEGLLPRLLSLSNVEEVDTALQNFASTFCSGMMHSPGFDGNSSLSFQML
670 680 690 700 710 720
400 410 420 430 440 450
pF1KSD MNADSLYTAAHCALLLNLKLSHGDYYRKRPTLAPGVMKDFMKQVQTSGVLMVFSQAWIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MNADSLYTAAHCALLLNLKLSHGDYYRKRPTLAPGVMKDFMKQVQTSGVLMVFSQAWIEE
730 740 750 760 770 780
460 470 480 490 500 510
pF1KSD LYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASAATESPFAQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASAATESPFAQSR
790 800 810 820 830 840
520 530 540 550 560 570
pF1KSD RIDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 RIDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKER
850 860 870 880 890 900
580 590 600 610 620 630
pF1KSD DAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEEREAQEPSDAITQVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 DAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEEREAQEPSDAITQVKL
910 920 930 940 950 960
640 650 660 670 680 690
pF1KSD KVEQKLEQIGKVQGVWLHTAHVLCMEAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KVEQKLEQIGKVQGVWLHTAHVLCMEAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHNH
970 980 990 1000 1010 1020
700 710 720 730 740 750
pF1KSD FSDGASQPPLTISQPQKATGSAGLLGDPECEGSPPEHSPEQGRSLSTAPVVQPLSIQDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 FSDGASQPPLTISQPQKATGSAGLLGDPECEGSPPEHSPEQGRSLSTAPVVQPLSIQDLV
1030 1040 1050 1060 1070 1080
760 770 780 790 800 810
pF1KSD REGSRGRASDFRGGSLMSGSSAAKVVLTLSTQADRLFEDATDKLNLMALGGFLYQLKKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 REGSRGRASDFRGGSLMSGSSAAKVVLTLSTQADRLFEDATDKLNLMALGGFLYQLKKAS
1090 1100 1110 1120 1130 1140
820 830 840 850 860 870
pF1KSD QSQLFHSVTDTVDYSLAMPGEVKSTQDRKSALHLFRLGNAMLRIVRSKARPLLHVMRCWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 QSQLFHSVTDTVDYSLAMPGEVKSTQDRKSALHLFRLGNAMLRIVRSKARPLLHVMRCWS
1150 1160 1170 1180 1190 1200
880 890 900 910 920 930
pF1KSD LVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWNEPPHFHFNEALFRPFERIMQLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWNEPPHFHFNEALFRPFERIMQLEL
1210 1220 1230 1240 1250 1260
940 950 960 970 980 990
pF1KSD CDEDVQDQVVTSIGELVEVCSTQIQSGWRPLFSALETVHGGNKSEMKEYLVGDYSMGKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 CDEDVQDQVVTSIGELVEVCSTQIQSGWRPLFSALETVHGGNKSEMKEYLVGDYSMGKGQ
1270 1280 1290 1300 1310 1320
1000 1010 1020 1030 1040 1050
pF1KSD APVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCAPAPGAPSTDLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 APVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCAPAPGAPSTDLC
1330 1340 1350 1360 1370 1380
1060 1070 1080 1090 1100 1110
pF1KSD LPALDYLRRCSQLLAKIYKMPLKPIFLSGRLAGLPRRLQEQSASSEDGIESVLSDFDDDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LPALDYLRRCSQLLAKIYKMPLKPIFLSGRLAGLPRRLQEQSASSEDGIESVLSDFDDDT
1390 1400 1410 1420 1430 1440
1120 1130 1140 1150 1160 1170
pF1KSD GLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 GLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVM
1450 1460 1470 1480 1490 1500
1180 1190 1200 1210 1220 1230
pF1KSD SVWLRRSHKDHSYWDMASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SVWLRRSHKDHSYWDMASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFEL
1510 1520 1530 1540 1550 1560
1240 1250 1260 1270 1280 1290
pF1KSD LVACVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LVACVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGC
1570 1580 1590 1600 1610 1620
1300 1310 1320 1330 1340 1350
pF1KSD FHSGTESFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQCSPKTPNNFDHAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 FHSGTESFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQCSPKTPNNFDHAQS
1630 1640 1650 1660 1670 1680
1360 1370 1380 1390 1400 1410
pF1KSD CQLIIELPPDEKPNGHTKKSVSFREIVVSLLSHQVLLQNLYDILLEEFVKGPSPGEEKTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 CQLIIELPPDEKPNGHTKKSVSFREIVVSLLSHQVLLQNLYDILLEEFVKGPSPGEEKTI
1690 1700 1710 1720 1730 1740
1420 1430 1440 1450 1460 1470
pF1KSD QVPEAKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 QVPEAKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYR
1750 1760 1770 1780 1790 1800
1480 1490 1500 1510 1520 1530
pF1KSD QSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFEDDERSTDSSQQCSSEDEDIFEETAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 QSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFEDDERSTDSSQQCSSEDEDIFEETAQ
1810 1820 1830 1840 1850 1860
1540 1550 1560 1570 1580 1590
pF1KSD VSPPRGKEKRQWRARMPLLSVQPVSNADWVWLVKRLHKLCMELCNNYIQMHLDLENCMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VSPPRGKEKRQWRARMPLLSVQPVSNADWVWLVKRLHKLCMELCNNYIQMHLDLENCMEE
1870 1880 1890 1900 1910 1920
1600 1610 1620 1630 1640 1650
pF1KSD PPIFKGDPFFILPSFQSESSTPSTGGFSGKETPSEDDRSQSREHMGESLSLKAGGGDLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 PPIFKGDPFFILPSFQSESSTPSTGGFSGKETPSEDDRSQSREHMGESLSLKAGGGDLLL
1930 1940 1950 1960 1970 1980
1660 1670 1680 1690 1700 1710
pF1KSD PPSPKVEKKDPSRKKEWWENAGNKIYTMAADKTISKLMTEYKKRKQQHNLSAFPKEVKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 PPSPKVEKKDPSRKKEWWENAGNKIYTMAADKTISKLMTEYKKRKQQHNLSAFPKEVKVE
1990 2000 2010 2020 2030 2040
1720 1730 1740 1750 1760 1770
pF1KSD KKGEPLGPRGQDSPLLQRPQHLMDQGQMRHSFSAGPELLRQDKRPRSGSTGSSLSVSVRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KKGEPLGPRGQDSPLLQRPQHLMDQGQMRHSFSAGPELLRQDKRPRSGSTGSSLSVSVRD
2050 2060 2070 2080 2090 2100
1780 1790 1800 1810 1820 1830
pF1KSD AEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 AEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGR
2110 2120 2130 2140 2150 2160
pF1KSD VGRVYDIIV
:::::::::
CCDS51 VGRVYDIIV
2170
1839 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:31:39 2016 done: Thu Nov 3 05:31:40 2016
Total Scan time: 7.010 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]