FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1205, 1215 aa
  1>>>pF1KSDA1205 1215 - 1215 aa - 1215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.9426+/-0.00128; mu= -21.6789+/- 0.078
 mean_var=860.2118+/-175.655, 0's: 0 Z-trim(117.9): 127  B-trim: 62 in 1/54
 Lambda= 0.043729
 statistics sampled from 18568 (18686) to 18568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.574), width:  16
 Scan time:  7.260

The best scores are:                                      opt bits E(32554)
CCDS46143.1 PRR12 gene_id:57479|Hs108|chr19        (2036) 8462 550.4 1.6e-155


>>CCDS46143.1 PRR12 gene_id:57479|Hs108|chr19             (2036 aa)
 initn: 8434 init1: 8434 opt: 8462  Z-score: 2905.5  bits: 550.4 E(32554): 1.6e-155
Smith-Waterman score: 8462; 99.3% identity (99.6% similar) in 1211 aa overlap (5-1215:826-2036)

                                         10        20        30    
pF1KSD                           MEQLPGVPPGPPHPVRPPPPPPPPMPLQLEAHLR
                                     :..  : :.:  ::::::::::::::::::
CCDS46 PPPPQLLPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPPPPPPPPMPLQLEAHLR
         800       810       820       830       840       850     

           40        50        60        70        80        90    
pF1KSD SHGLEPAAPSPRLRPEESLDPPGAMQELLGALEPLPPAPGDTGVGPPNSEGKDPAGAYRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SHGLEPAAPSPRLRPEESLDPPGAMQELLGALEPLPPAPGDTGVGPPNSEGKDPAGAYRS
         860       870       880       890       900       910     

          100       110       120       130       140       150    
pF1KSD PSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGPPEDEGDPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGPPEDEGDPK
         920       930       940       950       960       970     

          160       170       180       190       200       210    
pF1KSD AGAGPPPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AGAGPPPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPH
         980       990      1000      1010      1020      1030     

          220       230       240       250       260       270    
pF1KSD QAAPPPPPPPPPPPAPASEPKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QAAPPPPPPPPPPPAPASEPKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKLY
        1040      1050      1060      1070      1080      1090     

          280       290       300       310       320       330    
pF1KSD AQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGPRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGPRRR
        1100      1110      1120      1130      1140      1150     

          340       350       360       370       380       390    
pF1KSD GRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKPRGRGRGRGRKAEEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKPRGRGRGRGRKAEEAG
        1160      1170      1180      1190      1200      1210     

          400       410       420       430       440       450    
pF1KSD GTRLEPLKPLKIKLSVPKAGEGLGTSSGDAISGTDHNSLDSSLTREKIEAKIKEVEEKQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GTRLEPLKPLKIKLSVPKAGEGLGTSSGDAISGTDHNSLDSSLTREKIEAKIKEVEEKQP
        1220      1230      1240      1250      1260      1270     

          460       470       480       490       500       510    
pF1KSD EMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKSVPPSVPARGLQPQPPATPAVPHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKSVPPSVPARGLQPQPPATPAVPHP
        1280      1290      1300      1310      1320      1330     

          520       530       540       550       560       570    
pF1KSD PPSGAFGLGGALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PPSGAFGLGGALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQ
        1340      1350      1360      1370      1380      1390     

          580       590       600       610       620       630    
pF1KSD ESISSAISALDDPPLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ESISSAISALDDPPLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEE
        1400      1410      1420      1430      1440      1450     

          640       650       660       670       680       690    
pF1KSD KPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPP
        1460      1470      1480      1490      1500      1510     

          700       710       720       730       740       750    
pF1KSD PPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEGIFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEGIFR
        1520      1530      1540      1550      1560      1570     

          760       770       780       790       800       810    
pF1KSD ERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQRQFCATSNYLGYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQRQFCATSNYLGYF
        1580      1590      1600      1610      1620      1630     

          820       830       840       850       860       870    
pF1KSD GDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPVPVRRSGQAKNPVSAGGSSAPPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPVPVRRSGQAKNPVSAGGSSAPPPK
        1640      1650      1660      1670      1680      1690     

          880       890       900       910       920       930    
pF1KSD APAPPPKPETPEKTTSEKPPEQTPETAMPEPPAPEKPSLLRPVEKEKEKEKVTRGERPLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 APAPPPKPETPEKTTSEKPPEQTPETAMPEPPAPEKPSLLRPVEKEKEKEKVTRGERPLR
        1700      1710      1720      1730      1740      1750     

          940       950       960       970       980       990    
pF1KSD GERATSGRQTRPERSLATGQPATSRLPKARPTKVKAEPPPKKRKKWLKEAGGNATAGGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GERATSGRQTRPERSLATGQPATSRLPKARPTKVKAEPPPKKRKKWLKEAGGNATAGGGP
        1760      1770      1780      1790      1800      1810     

         1000      1010      1020      1030      1040      1050    
pF1KSD PGSSSDSESSPGAPSEDERAVPGRLLKTRAMREMYRSYVEMLVSTALDPDMIQALEDTHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PGSSSDSESSPGAPSEDERAVPGRLLKTRAMREMYRSYVEMLVSTALDPDMIQALEDTHD
        1820      1830      1840      1850      1860      1870     

         1060      1070      1080      1090      1100      1110    
pF1KSD ELYLPPMRKIDGLLNEHKKKVLKRLSLSPALQDALHTFPQLQVEQSGEGSPEEGAVRLRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ELYLPPMRKIDGLLNEHKKKVLKRLSLSPALQDALHTFPQLQVEQSGEGSPEEGAVRLRP
        1880      1890      1900      1910      1920      1930     

         1120      1130      1140      1150      1160      1170    
pF1KSD AGEPYNRKTLSKLKRSVVRAQEFKVELEKSGYYTLYHSLHHYKYHTFLRCRDQTLAIEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AGEPYNRKTLSKLKRSVVRAQEFKVELEKSGYYTLYHSLHHYKYHTFLRCRDQTLAIEGG
        1940      1950      1960      1970      1980      1990     

         1180      1190      1200      1210     
pF1KSD AEDLGQEEVVQQCMRNQPWLEQLFDSFSDLLAQAQAHSRCG
       :::::::::::::::::::::::::::::::::::::::::
CCDS46 AEDLGQEEVVQQCMRNQPWLEQLFDSFSDLLAQAQAHSRCG
        2000      2010      2020      2030      




1215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:22:36 2016 done: Thu Nov  3 05:22:37 2016
 Total Scan time:  7.260 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]