FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1165, 242 aa
  1>>>pF1KSDA1165 242 - 242 aa - 242 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6064+/-0.000739; mu= 4.4900+/- 0.045
 mean_var=130.5486+/-25.834, 0's: 0 Z-trim(114.2): 8  B-trim: 0 in 0/50
 Lambda= 0.112250
 statistics sampled from 14740 (14744) to 14740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.453), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS31998.1 NDFIP2 gene_id:54602|Hs108|chr13       ( 336) 1642 276.3 1.8e-74
CCDS4273.1 NDFIP1 gene_id:80762|Hs108|chr5         ( 221)  821 143.3 1.3e-34


>>CCDS31998.1 NDFIP2 gene_id:54602|Hs108|chr13            (336 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 1450.6  bits: 276.3 E(32554): 1.8e-74
Smith-Waterman score: 1642; 99.6% identity (100.0% similar) in 242 aa overlap (1-242:95-336)

                                             10        20        30
pF1KSD                               MDHHQPGTGRYQVLLNEEDNSESSAIEQPP
                                     ::::::::::::::::::::::::::::::
CCDS31 AATTSSTGVAVGAEHGEDSLSRKPDPEPGRMDHHQPGTGRYQVLLNEEDNSESSAIEQPP
           70        80        90       100       110       120    

               40        50        60        70        80        90
pF1KSD TSNPAPQIVQAVSSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLP
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSNPAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLP
          130       140       150       160       170       180    

              100       110       120       130       140       150
pF1KSD TYDEAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TYDEAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFN
          190       200       210       220       230       240    

              160       170       180       190       200       210
pF1KSD WLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 WLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGL
          250       260       270       280       290       300    

              220       230       240  
pF1KSD LLFFRGFVNYLKVRNMSESMAAAHRTRYFFLL
       ::::::::::::::::::::::::::::::::
CCDS31 LLFFRGFVNYLKVRNMSESMAAAHRTRYFFLL
          310       320       330      

>>CCDS4273.1 NDFIP1 gene_id:80762|Hs108|chr5              (221 aa)
 initn: 904 init1: 669 opt: 821  Z-score: 734.9  bits: 143.3 E(32554): 1.3e-34
Smith-Waterman score: 821; 60.3% identity (78.9% similar) in 199 aa overlap (43-241:28-220)

             20        30        40        50        60        70  
pF1KSD VLLNEEDNSESSAIEQPPTSNPAPQIVQAVSSAPALETDSSPPPYSSITVEVPTTSDTEV
                                     :. :   . ..:::::::..:  .  : . 
CCDS42    MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKD
                  10        20        30        40        50       

             80        90       100       110       120       130  
pF1KSD YGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLR
        . : : :: :.:::.::.:::::..:: :    .       ..:.   ::::.::::::
CCDS42 ESGF-PKPPSYNVATTLPSYDEAERTKAEATIPLVPG-----RDEDFVGRDDFDDADQLR
        60         70        80        90            100       110 

            140       150       160       170       180       190  
pF1KSD VGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFT
       .::::::::.:::::.:::.:: ::::.:.. ::::::: :::::::::::::::: :: 
CCDS42 IGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFP
             120       130       140       150       160       170 

            200       210       220       230       240  
pF1KSD GYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFLL
       :::.:::::::.:::::.:::.:::.:: :::.: :...   ::: .:. 
CCDS42 GYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY
             180       190       200       210       220 




242 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:11:38 2016 done: Thu Nov  3 05:11:39 2016
 Total Scan time:  2.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]