FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1138, 1221 aa
  1>>>pF1KSDA1138 1221 - 1221 aa - 1221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1931+/-0.00101; mu= -1.8390+/- 0.061
 mean_var=386.7557+/-78.679, 0's: 0 Z-trim(116.0): 57  B-trim: 160 in 1/51
 Lambda= 0.065216
 statistics sampled from 16490 (16544) to 16490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.508), width:  16
 Scan time:  6.580

The best scores are:                                      opt bits E(32554)
CCDS32866.1 REXO1 gene_id:57455|Hs108|chr19        (1221) 8234 789.7       0


>>CCDS32866.1 REXO1 gene_id:57455|Hs108|chr19             (1221 aa)
 initn: 8234 init1: 8234 opt: 8234  Z-score: 4202.7  bits: 789.7 E(32554):    0
Smith-Waterman score: 8234; 99.8% identity (99.8% similar) in 1221 aa overlap (1-1221:1-1221)

               10        20        30        40        50        60
pF1KSD MLRSTGFFRAIDCPYWSGAPGGPCRRPYCHFRHRGARGPGAPGDGGEAPPAAGLGYDPYN
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS32 MLRSTGFFRAIDCPYWSGAPGGPCRRPYCHFRHRGARGSGAPGDGGEAPPAAGLGYDPYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PELPKPPAQRENGTLGLGEEPRPDVLELELVNQAIEAVRSEVELEQRRYRELLETTREHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PELPKPPAQRENGTLGLGEEPRPDVLELELVNQAIEAVRSEVELEQRRYRELLETTREHR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SAEAPALAPRGPNASPTVGPDEDAFPLAFDYSPGSHGLLSPDAGYQPTPLAAPAEPGSKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SAEAPALAPRGPNASPTVGPDEDAFPLAFDYSPGSHGLLSPDAGYQPTPLAAPAEPGSKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SLASLDRGQGRGGGGGGALEYVPKAVSQPRRHSRPVPSGKYVVDNSRPPTDLEYDPLSNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SLASLDRGQGRGGGGGGALEYVPKAVSQPRRHSRPVPSGKYVVDNSRPPTDLEYDPLSNY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SARHLSRASSRDERAAKRPRGSRGSEPYTPAPKKLCDPFGSCDARFSDSEDEAATVPGNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SARHLSRASSRDERAAKRPRGSRGSEPYTPAPKKLCDPFGSCDARFSDSEDEAATVPGNE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PTTASTPKARADPEIKATGQPPSKEGLEAEGGGLRETKETAVQCDVGDLQPPPAKPASPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PTTASTPKARADPEIKATGQPPSKEGLEAEGGGLRETKETAVQCDVGDLQPPPAKPASPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QVQSSQDGGCPKEGKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRADKKGPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QVQSSQDGGCPKEGKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRADKKGPQA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SSPRRKAERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSPRRKAERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DRKSTKAPSGKLVERKARSLDEGASQDAPKLKKRALSHADLFGDESEDEAAGPGVPSVWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DRKSTKAPSGKLVERKARSLDEGASQDAPKLKKRALSHADLFGDESEDEAAGPGVPSVWP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SALPSLSSDSDSDSDSSLGFPEAQGPPKRLKASPPPSPAPSSSSSSSSSTSSAGADVDYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SALPSLSSDSDSDSDSSLGFPEAQGPPKRLKASPPPSPAPSSSSSSSSSTSSAGADVDYS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD ALEKEVDFDSDPMEECLRIFNESTSVKTEDRGRLARQPPKEEKSEEKGLSGLTTLFPGQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALEKEVDFDSDPMEECLRIFNESTSVKTEDRGRLARQPPKEEKSEEKGLSGLTTLFPGQK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD RRISHLSKQGQEVEPPRRGPAVPPARPPTAQEVCYLRAQQAQRASASLLQAPARLAEKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RRISHLSKQGQEVEPPRRGPAVPPARPPTAQEVCYLRAQQAQRASASLLQAPARLAEKSP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SVHISAPGEKRRIAHIPNPRLAAAPTGAKRTLAASGSQPSNGPEPGGQQLKTRTLSGMAS
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS32 SVHISAPGEKRRIAHIPNPRLAAAPTGAKRTLAASGSQSSNGPEPGGQQLKTRTLSGMAS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD KTTTTIIPKRIAHSPSLQSLKKPIIPKEFGGKVPTVIRQRYLNLFIEECLKFCTSNQEAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KTTTTIIPKRIAHSPSLQSLKKPIIPKEFGGKVPTVIRQRYLNLFIEECLKFCTSNQEAI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD EKALNEEKVAYDRSPSKNIYLNVAVNTLKKLRGLAPSAVPGLSKTSGRRVVSHEVVLGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EKALNEEKVAYDRSPSKNIYLNVAVNTLKKLRGLAPSAVPGLSKTSGRRVVSHEVVLGGR
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD LAAKTSFSLSRPSSPRVEDLKGAALYSRLREYLLTQDQLKENGYPFPHPERPGGAIIFTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAAKTSFSLSRPSSPRVEDLKGAALYSRLREYLLTQDQLKENGYPFPHPERPGGAIIFTA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD EEKRPKDSSCRTCCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEKRPKDSSCRTCCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCCSAA
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD AGSVGCQVAKQHVQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AGSVGCQVAKQHVQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD VVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILI
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD GHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSE
             1150      1160      1170      1180      1190      1200

             1210      1220 
pF1KSD DAGACMHLVIWKVREDAKTKR
       :::::::::::::::::::::
CCDS32 DAGACMHLVIWKVREDAKTKR
             1210      1220 




1221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:08:04 2016 done: Thu Nov  3 05:08:05 2016
 Total Scan time:  6.580 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]