FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1094, 538 aa
  1>>>pF1KSDA1094 538 - 538 aa - 538 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0045+/-0.000881; mu= 20.4052+/- 0.053
 mean_var=64.9056+/-13.372, 0's: 0 Z-trim(106.0): 18  B-trim: 2 in 1/49
 Lambda= 0.159196
 statistics sampled from 8713 (8718) to 8713 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.268), width:  16
 Scan time:  3.430

The best scores are:                                      opt bits E(32554)
CCDS6915.1 DOLK gene_id:22845|Hs108|chr9           ( 538) 3494 811.4       0


>>CCDS6915.1 DOLK gene_id:22845|Hs108|chr9                (538 aa)
 initn: 3494 init1: 3494 opt: 3494  Z-score: 4332.8  bits: 811.4 E(32554):    0
Smith-Waterman score: 3494; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KSD MTRECPSPAPGPGAPLSGSVLAEAAVVFAVVLSIHATVWDRYSWCAVALAVQAFYVQYKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MTRECPSPAPGPGAPLSGSVLAEAAVVFAVVLSIHATVWDRYSWCAVALAVQAFYVQYKW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DRLLQQGSAVFQFRMSANSGLLPASMVMPLLGLVMKERCQTAGNPFFERFGIVVAATGMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DRLLQQGSAVFQFRMSANSGLLPASMVMPLLGLVMKERCQTAGNPFFERFGIVVAATGMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VALFSSVLALGITRPVPTNTCVILGLAGGVIIYIMKHSLSVGEVIEVLEVLLIFVYLNMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VALFSSVLALGITRPVPTNTCVILGLAGGVIIYIMKHSLSVGEVIEVLEVLLIFVYLNMI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLYLLPRCFTPGEALLVLGGISFVLNQLIKRSLTLVESQGDPVDFFLLVVVVGMVLMGIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LLYLLPRCFTPGEALLVLGGISFVLNQLIKRSLTLVESQGDPVDFFLLVVVVGMVLMGIF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD FSTLFVFMDSGTWASSIFFHLMTCVLSLGVVLPWLHRLIRRNPLLWLLQFLFQTDTRIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FSTLFVFMDSGTWASSIFFHLMTCVLSLGVVLPWLHRLIRRNPLLWLLQFLFQTDTRIYL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSI
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KSD FAQIISVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDNLLLPLYLLILLMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FAQIISVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDNLLLPLYLLILLMA
              490       500       510       520       530        




538 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:59:33 2016 done: Thu Nov  3 04:59:34 2016
 Total Scan time:  3.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]