FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1089, 1016 aa
  1>>>pF1KSDA1089 1016 - 1016 aa - 1016 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6516+/-0.000918; mu= 12.1029+/- 0.056
 mean_var=157.2520+/-30.618, 0's: 0 Z-trim(110.5): 19  B-trim: 0 in 0/53
 Lambda= 0.102277
 statistics sampled from 11682 (11693) to 11682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.359), width:  16
 Scan time:  5.440

The best scores are:                                      opt bits E(32554)
CCDS1137.1 SMG5 gene_id:23381|Hs108|chr1           (1016) 6778 1012.8       0


>>CCDS1137.1 SMG5 gene_id:23381|Hs108|chr1                (1016 aa)
 initn: 6778 init1: 6778 opt: 6778  Z-score: 5411.2  bits: 1012.8 E(32554):    0
Smith-Waterman score: 6778; 100.0% identity (100.0% similar) in 1016 aa overlap (1-1016:1-1016)

               10        20        30        40        50        60
pF1KSD MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKRCKDIKRLLVNFMYLQSLLQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKRCKDIKRLLVNFMYLQSLLQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PESKEPVEKEEEPDPEPPPVTPQVGEGRKSRKFSRLSCLRRRRHPPKVGDDSDLSEGFES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PESKEPVEKEEEPDPEPPPVTPQVGEGRKSRKFSRLSCLRRRRHPPKVGDDSDLSEGFES
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEEEEGTRSPTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEEEEGTRSPTLE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD PPRGRSEAPDSLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTNPHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPRGRSEAPDSLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTNPHT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD SASHRPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SASHRPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGCELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGCELP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD DLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRPLLSTLEESVVRICCIRSFGHFIARLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRPLLSTLEESVVRICCIRSFGHFIARLQ
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD GSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD EGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHP
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD GARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQG
              910       920       930       940       950       960

              970       980       990      1000      1010      
pF1KSD AGEEDPSGMVTIITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AGEEDPSGMVTIITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG
              970       980       990      1000      1010      




1016 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:57:12 2016 done: Thu Nov  3 04:57:13 2016
 Total Scan time:  5.440 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]