Result of FASTA (ccds) for
pF1KSDA1052
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1052, 1455 aa
1>>>pF1KSDA1052 1455 - 1455 aa - 1455 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.7552+/-0.00117; mu= -13.9780+/- 0.070
mean_var=550.6441+/-115.696, 0's: 0 Z-trim(114.8): 140 B-trim: 0 in 0/54
Lambda= 0.054656
statistics sampled from 15205 (15333) to 15205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.471), width: 16
Scan time: 6.570
The best scores are: opt bits E(32554)
CCDS31683.1 CEP164 gene_id:22897|Hs108|chr11 (1460) 9360 754.2 6.4e-217
>>CCDS31683.1 CEP164 gene_id:22897|Hs108|chr11 (1460 aa)
initn: 6313 init1: 4930 opt: 9360 Z-score: 4007.9 bits: 754.2 E(32554): 6.4e-217
Smith-Waterman score: 9360; 99.2% identity (99.2% similar) in 1463 aa overlap (1-1455:1-1460)
10 20 30 40 50 60
pF1KSD MAGRPLRIGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAGRPLRIGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLSTSGAIKKKKKKKEKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKLSTSGAIKKKKKKKEKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KKDRDPPKSSLALGSSLAPVHVPLGGLAPLRGLVDTPPSALRGSQSVSLGSSVESGRQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KKDRDPPKSSLALGSSLAPVHVPLGGLAPLRGLVDTPPSALRGSQSVSLGSSVESGRQLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ELMLPSQGLKTSAYTKGLLGSIYEDKTALSLLGLGEETNEEDEEESDNQSVHSSSEPLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELMLPSQGLKTSAYTKGLLGSIYEDKTALSLLGLGEETNEEDEEESDNQSVHSSSEPLRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LHLDIGALGGDFEYEESLRTSQPEEKKDVSLDSDAAGPPTPCKPSSPGADSSLSSAVGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LHLDIGALGGDFEYEESLRTSQPEEKKDVSLDSDAAGPPTPCKPSSPGADSSLSSAVGKG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RQGSGARPGLPEKEENEKSEPKICRNLVTPKADPTGSEPAKASEKEAPEDTVDAGEEGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RQGSGARPGLPEKEENEKSEPKICRNLVTPKADPTGSEPAKASEKEAPEDTVDAGEEGSR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD REEAAKEPKKKASALEEGSSDASQELEISEHMKEPQLSDSIASDPKSFHGLDFGFRSRIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 REEAAKEPKKKASALEEGSSDASQELEISEHMKEPQLSDSIASDPKSFHGLDFGFRSRIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD EHLLDVDVLSPVLGGACRQAQQPLGIEDKDDSQSSQDELQSKQSKGLEERYHRLSPPLPH
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS31 EHLLDVDVLSPVLGGACRQAQQPLGIEDKDDSQSSQDELQSKQSKGLEER---LSPPLPH
430 440 450 460 470
490 500 510 520 530 540
pF1KSD EERAQSPPRSLATEEEPPQGPEGQPEWKEAEELGEDSAASLSLQLSLQREQAPSPPAACE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EERAQSPPRSLATEEEPPQGPEGQPEWKEAEELGEDSAASLSLQLSLQREQAPSPPAACE
480 490 500 510 520 530
550 560 570 580 590 600
pF1KSD KGKEQHSQAEELGPGQEEAEDPEEKVAVSPTPPVSPEVRSTEPVAPPEQLSEAALKAMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KGKEQHSQAEELGPGQEEAEDPEEKVAVSPTPPVSPEVRSTEPVAPPEQLSEAALKAMEE
540 550 560 570 580 590
610 620 630 640 650 660
pF1KSD AVAQVLEQDQRHLLESKQEKMQQLREKLCQEEEEEILRLHQQKEQSLSSLRERLQKAIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AVAQVLEQDQRHLLESKQEKMQQLREKLCQEEEEEILRLHQQKEQSLSSLRERLQKAIEE
600 610 620 630 640 650
670 680 690 700 710 720
pF1KSD EEARMREEESQRLSWLRAQVQSSTQADEDQIRAEQEASLQKLREELESQQKAERASLEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEARMREEESQRLSWLRAQVQSSTQADEDQIRAEQEASLQKLREELESQQKAERASLEQK
660 670 680 690 700 710
730 740 750 760 770 780
pF1KSD NRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAELERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NRQMLEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAELERL
720 730 740 750 760 770
790 800 810 820 830 840
pF1KSD CSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHVAGYEHELSSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHVAGYEHELSSLLR
780 790 800 810 820 830
850 860 870 880 890 900
pF1KSD EKRQEVEGEHERRLDKMKEEHQQVMAKAREQYEAEERKQRAELLGHLTGELERLQRAHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKRQEVEGEHERRLDKMKEEHQQVMAKAREQYEAEERKQRAELLGHLTGELERLQRAHER
840 850 860 870 880 890
910 920 930 940 950 960
pF1KSD ELETVRQEQHKRLEDLRRRHREQERKLQDLELDLETRAKDVKARLALLEVQEETARREKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELETVRQEQHKRLEDLRRRHREQERKLQDLELDLETRAKDVKARLALLEVQEETARREKQ
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KSD QLLDVQRQVALKSEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQARKLKLESQVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QLLDVQRQVALKSEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQARKLKLESQVDL
960 970 980 990 1000 1010
1030 1040 1050 1060 1070 1080
pF1KSD LQAQSQQLQKHFSSLEAEAQKKQHLLREVTVEENNASPHFEPDLHIEDLRKSLGTNQTKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LQAQSQQLQKHFSSLEAEAQKKQHLLREVTVEENNASPHFEPDLHIEDLRKSLGTNQTKE
1020 1030 1040 1050 1060 1070
1090 1100 1110 1120 1130 1140
pF1KSD VSSSLSQSKEDLYLDSLSSHNVWHLLSAEGVALRSAKEFLVQQTRSMRRRQTALKAAQQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VSSSLSQSKEDLYLDSLSSHNVWHLLSAEGVALRSAKEFLVQQTRSMRRRQTALKAAQQH
1080 1090 1100 1110 1120 1130
1150 1160 1170 1180 1190 1200
pF1KSD WRHELASAQEVAKDPPGIKALEDMRKNLEKETRHLDEMKSAMRKGHNLLKKKEEKLNQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 WRHELASAQEVAKDPPGIKALEDMRKNLEKETRHLDEMKSAMRKGHNLLKKKEEKLNQLE
1140 1150 1160 1170 1180 1190
1210 1220 1230 1240 1250
pF1KSD SSLWEEASDEGTLGGSPTKKAVTFDLSDMDSLSSESSESFSPPH--------LDSTPSLT
:::::::::::::::::::::::::::::::::::::::::::: .:::::::
CCDS31 SSLWEEASDEGTLGGSPTKKAVTFDLSDMDSLSSESSESFSPPHREWWRQQRIDSTPSLT
1200 1210 1220 1230 1240 1250
1260 1270 1280 1290 1300 1310
pF1KSD SRKIHGLSHSLRQISSQLSSVLSILDSLNPQSPPPLLASMPAQLPPRDPKSTPTPTYYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SRKIHGLSHSLRQISSQLSSVLSILDSLNPQSPPPLLASMPAQLPPRDPKSTPTPTYYGS
1260 1270 1280 1290 1300 1310
1320 1330 1340 1350 1360 1370
pF1KSD LARFSALSSATPTSTQWAWDSGQGPRLPSSVAQTVDDFLLEKWRKYFPSGIPLLSNSPTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LARFSALSSATPTSTQWAWDSGQGPRLPSSVAQTVDDFLLEKWRKYFPSGIPLLSNSPTP
1320 1330 1340 1350 1360 1370
1380 1390 1400 1410 1420 1430
pF1KSD LESRLGYMSASEQLRLLQHSHSQVPEAGSTTFQGIIEANRRWLERVKNDPRLPLFSSTPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LESRLGYMSASEQLRLLQHSHSQVPEAGSTTFQGIIEANRRWLERVKNDPRLPLFSSTPK
1380 1390 1400 1410 1420 1430
1440 1450
pF1KSD PKATLSLLQLGLDEHNRVKVYRF
:::::::::::::::::::::::
CCDS31 PKATLSLLQLGLDEHNRVKVYRF
1440 1450 1460
1455 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:46:16 2016 done: Thu Nov 3 04:46:17 2016
Total Scan time: 6.570 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]