Result of FASTA (ccds) for
pF1KSDA1029
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1029, 903 aa
1>>>pF1KSDA1029 903 - 903 aa - 903 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 16.1498+/-0.00124; mu= -25.6904+/- 0.075
mean_var=730.0076+/-150.851, 0's: 0 Z-trim(116.6): 53 B-trim: 127 in 1/52
Lambda= 0.047469
statistics sampled from 17210 (17255) to 17210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.53), width: 16
Scan time: 5.380
The best scores are: opt bits E(32554)
CCDS4308.1 SYNPO gene_id:11346|Hs108|chr5 ( 903) 6166 437.9 4e-122
CCDS54938.1 SYNPO gene_id:11346|Hs108|chr5 ( 685) 4507 324.2 5.2e-88
CCDS54937.1 SYNPO gene_id:11346|Hs108|chr5 ( 929) 4507 324.3 6.6e-88
>>CCDS4308.1 SYNPO gene_id:11346|Hs108|chr5 (903 aa)
initn: 6166 init1: 6166 opt: 6166 Z-score: 2305.9 bits: 437.9 E(32554): 4e-122
Smith-Waterman score: 6166; 100.0% identity (100.0% similar) in 903 aa overlap (1-903:1-903)
10 20 30 40 50 60
pF1KSD MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSSPAPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSSPAPPPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVPQSLPLSSIQQNSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVPQSLPLSSIQQNSSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AQLPSNGTGPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATLIPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AQLPSNGTGPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATLIPSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSVVNRTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSVVNRTA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVERRMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVERRMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GQRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKGQAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GQRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKGQAVP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD ASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD FALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEASGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEASGKG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAPGAFRVASRSPARTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAPGAFRVASRSPARTP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSLDLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSLDLVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD APRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 APRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD PLPPPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PLPPPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAENP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD RPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRSPLPAGPSSCTSPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRSPLPAGPSSCTSPRS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD PLPAPPRPFLYRRSPTDSDVSLDSEDSGAKSPGILGYNICPRGWNGSLRLKRGSLPAEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PLPAPPRPFLYRRSPTDSDVSLDSEDSGAKSPGILGYNICPRGWNGSLRLKRGSLPAEAS
850 860 870 880 890 900
pF1KSD CTT
:::
CCDS43 CTT
>>CCDS54938.1 SYNPO gene_id:11346|Hs108|chr5 (685 aa)
initn: 4506 init1: 4506 opt: 4507 Z-score: 1693.5 bits: 324.2 E(32554): 5.2e-88
Smith-Waterman score: 4507; 99.3% identity (99.6% similar) in 682 aa overlap (1-682:1-682)
10 20 30 40 50 60
pF1KSD MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSSPAPPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSSPAPPPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVPQSLPLSSIQQNSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVPQSLPLSSIQQNSSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AQLPSNGTGPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATLIPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AQLPSNGTGPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATLIPSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSVVNRTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSVVNRTA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVERRMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVERRMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GQRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKGQAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GQRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKGQAVP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD ASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD FALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEASGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEASGKG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD AELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAPGAFRVASRSPARTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAPGAFRVASRSPARTP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSLDLVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSLDLVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD NLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD APRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPP
:::::::::::::::: . :.
CCDS54 APRPSFSTRNAGIEAQVWKPSFCFK
670 680
>>CCDS54937.1 SYNPO gene_id:11346|Hs108|chr5 (929 aa)
initn: 4506 init1: 4506 opt: 4507 Z-score: 1691.7 bits: 324.3 E(32554): 6.6e-88
Smith-Waterman score: 4507; 99.3% identity (99.6% similar) in 682 aa overlap (1-682:245-926)
10 20 30
pF1KSD MEGYSEEASLLRHLEKVASEEEEVPLVVYL
::::::::::::::::::::::::::::::
CCDS54 LSLSSTSLPEPGPPRHPSPQSPDRGVPGHSMEGYSEEASLLRHLEKVASEEEEVPLVVYL
220 230 240 250 260 270
40 50 60 70 80 90
pF1KSD KENAALLTANGLHLSQNREAQQSSPAPPPAEVHSPAADVNQNLASPSATLTTPTSNSSHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KENAALLTANGLHLSQNREAQQSSPAPPPAEVHSPAADVNQNLASPSATLTTPTSNSSHN
280 290 300 310 320 330
100 110 120 130 140 150
pF1KSD PPATDVNQNPPATVVPQSLPLSSIQQNSSEAQLPSNGTGPASKPSTLCADGQPQAPAEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PPATDVNQNPPATVVPQSLPLSSIQQNSSEAQLPSNGTGPASKPSTLCADGQPQAPAEEV
340 350 360 370 380 390
160 170 180 190 200 210
pF1KSD RCSTLLIDKVSTPATTTSTFSREATLIPSSRPPASDFMSSSLLIDIQPNTLVVSADQEMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RCSTLLIDKVSTPATTTSTFSREATLIPSSRPPASDFMSSSLLIDIQPNTLVVSADQEMS
400 410 420 430 440 450
220 230 240 250 260 270
pF1KSD GRAAATTPTKVYSEVHFTLAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GRAAATTPTKVYSEVHFTLAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAP
460 470 480 490 500 510
280 290 300 310 320 330
pF1KSD APQPPSLPDRSPRPQRHIMSRSPMVERRMMGQRSPASERRPLGNFTAPPTYTETLSTAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 APQPPSLPDRSPRPQRHIMSRSPMVERRMMGQRSPASERRPLGNFTAPPTYTETLSTAPL
520 530 540 550 560 570
340 350 360 370 380 390
pF1KSD ASWVRSPPSYSVLYPSSDPKSSHLKGQAVPASKTGILEESMARRGSRKSMFTFVEKPKVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ASWVRSPPSYSVLYPSSDPKSSHLKGQAVPASKTGILEESMARRGSRKSMFTFVEKPKVT
580 590 600 610 620 630
400 410 420 430 440 450
pF1KSD PNPDLLDLVQTADEKRRQRDQGEVGVEEEPFALGAEASNFQQEPAPRDRASPAAAEEVVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PNPDLLDLVQTADEKRRQRDQGEVGVEEEPFALGAEASNFQQEPAPRDRASPAAAEEVVP
640 650 660 670 680 690
460 470 480 490 500 510
pF1KSD EWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSSHTPELARCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSSHTPELARCPS
700 710 720 730 740 750
520 530 540 550 560 570
pF1KSD PTMSLPSSWKYPTNAPGAFRVASRSPARTPPASLYHGYLPENGVLRPEPTKQPPYQLRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PTMSLPSSWKYPTNAPGAFRVASRSPARTPPASLYHGYLPENGVLRPEPTKQPPYQLRPS
760 770 780 790 800 810
580 590 600 610 620 630
pF1KSD LFVLSPIKEPAKVSPRAASPAKPSSLDLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFVLSPIKEPAKVSPRAASPAKPSSLDLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQD
820 830 840 850 860 870
640 650 660 670 680 690
pF1KSD SLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLPTSPPWTP
:::::::::::::::::::::::::::::::::::::::::::::: . :.
CCDS54 SLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQVWKPSFCFK
880 890 900 910 920
700 710 720 730 740 750
pF1KSD GASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRPETEARPPS
903 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:40:21 2016 done: Thu Nov 3 04:40:22 2016
Total Scan time: 5.380 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]