FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1024, 916 aa
  1>>>pF1KSDA1024 916 - 916 aa - 916 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1104+/-0.00103; mu= 13.2137+/- 0.062
 mean_var=116.4854+/-23.374, 0's: 0 Z-trim(107.2): 15  B-trim: 0 in 0/52
 Lambda= 0.118833
 statistics sampled from 9459 (9462) to 9459 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.291), width:  16
 Scan time:  4.280

The best scores are:                                      opt bits E(32554)
CCDS32306.1 KIAA1024 gene_id:23251|Hs108|chr15     ( 916) 6161 1068.0       0


>>CCDS32306.1 KIAA1024 gene_id:23251|Hs108|chr15          (916 aa)
 initn: 6161 init1: 6161 opt: 6161  Z-score: 5710.9  bits: 1068.0 E(32554):    0
Smith-Waterman score: 6161; 100.0% identity (100.0% similar) in 916 aa overlap (1-916:1-916)

               10        20        30        40        50        60
pF1KSD METSQETSLFLVKILEELDSKQNTVSYQDLCKSLCARFDLSQLAKLRSVLFYTACLDPNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 METSQETSLFLVKILEELDSKQNTVSYQDLCKSLCARFDLSQLAKLRSVLFYTACLDPNF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PATLFKDKMKCTVNNQQSKKIMVAADIVTIFNLIQMNGGAAKEKLPTGRQKVRKKEASFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PATLFKDKMKCTVNNQQSKKIMVAADIVTIFNLIQMNGGAAKEKLPTGRQKVRKKEASFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SCRSDTEICNAAECEPLNCELSERSFSRGYPIRQSSKCRKMDCKDCPQFVPASEPNFLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SCRSDTEICNAAECEPLNCELSERSFSRGYPIRQSSKCRKMDCKDCPQFVPASEPNFLLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VSKEVKNRAASLDRLQALAPYSVTSPQPCEMQRTYFPMNIENESISDQDSLPINQSIKET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSKEVKNRAASLDRLQALAPYSVTSPQPCEMQRTYFPMNIENESISDQDSLPINQSIKET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD FISNEEPFVVQSCVQKRNIFKEDFHNLMAVSPSLVGPISKAENEHREPQSRKEPHKPPFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FISNEEPFVVQSCVQKRNIFKEDFHNLMAVSPSLVGPISKAENEHREPQSRKEPHKPPFF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD NHSFEMPYNSQYLNPVYSPVPDKRRAKHESLDDLQASTYFGPTPVMGTQEARRCLGKPNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NHSFEMPYNSQYLNPVYSPVPDKRRAKHESLDDLQASTYFGPTPVMGTQEARRCLGKPNK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QTPWPAKSWSLNTEEVPDFERSFFNRNPSEEKLHYPNASSQTPNFPAPERRPTYLVPKDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QTPWPAKSWSLNTEEVPDFERSFFNRNPSEEKLHYPNASSQTPNFPAPERRPTYLVPKDQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD QPILPIAYAAKQNGLKSKEISSPVDLEKHEPVKKFKDKSINCTSGQLSSDTSSVGTQTEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QPILPIAYAAKQNGLKSKEISSPVDLEKHEPVKKFKDKSINCTSGQLSSDTSSVGTQTEH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VLEPKKCRDLCTSGQGKYSDRHTMKHSDDDSEIVSDDISDIFRFLDDMSISGSTGVIQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLEPKKCRDLCTSGQGKYSDRHTMKHSDDDSEIVSDDISDIFRFLDDMSISGSTGVIQSS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD CYNSTGSLSQLHKSDCDSSPEHNLTKIANGVPNSKGDKGNRPENTHHSEEELKTSVCKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CYNSTGSLSQLHKSDCDSSPEHNLTKIANGVPNSKGDKGNRPENTHHSEEELKTSVCKLV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LRIGEIERKLESLSGVRDEISQVLGKLNKLDQKMQQPEKVSVQIDLNSLTSEGPSDDSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LRIGEIERKLESLSGVRDEISQVLGKLNKLDQKMQQPEKVSVQIDLNSLTSEGPSDDSAS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD PRMFHAHSGSHGPKLENNPDWCCSDASGSNSESLRVKALKKSLFTRPSSRSLTEENSATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PRMFHAHSGSHGPKLENNPDWCCSDASGSNSESLRVKALKKSLFTRPSSRSLTEENSATE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SKIASISNSPRDWRTITYTNRVGLNEEEIKDTGPGDNKDWHRKSKEADRQYDIPPQHRLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SKIASISNSPRDWRTITYTNRVGLNEEEIKDTGPGDNKDWHRKSKEADRQYDIPPQHRLP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD KQPKDGFLVEQVFSPHPYPASLKAHMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KQPKDGFLVEQVFSPHPYPASLKAHMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNAG
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD DKGKLTALDLQTQESLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALIAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DKGKLTALDLQTQESLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALIAAAA
              850       860       870       880       890       900

              910      
pF1KSD CTVILVIVVPICTMKS
       ::::::::::::::::
CCDS32 CTVILVIVVPICTMKS
              910      




916 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:39:08 2016 done: Thu Nov  3 04:39:09 2016
 Total Scan time:  4.280 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]