FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0908, 505 aa
  1>>>pF1KSDA0908 505 - 505 aa - 505 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9254+/-0.000402; mu= 19.9167+/- 0.025
 mean_var=61.8689+/-12.599, 0's: 0 Z-trim(110.6): 44  B-trim: 0 in 0/51
 Lambda= 0.163057
 statistics sampled from 19018 (19044) to 19018 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.579), E-opt: 0.2 (0.223), width:  16
 Scan time:  9.180

The best scores are:                                      opt bits E(85289)
NP_057381 (OMIM: 610995) prenylcysteine oxidase 1  ( 505) 3336 793.8       0
NP_000231 (OMIM: 300615,309850) amine oxidase [fla ( 527)  144 42.9  0.0027
NP_000889 (OMIM: 309860) amine oxidase [flavin-con ( 520)  140 42.0  0.0051


>>NP_057381 (OMIM: 610995) prenylcysteine oxidase 1 prec  (505 aa)
 initn: 3336 init1: 3336 opt: 3336  Z-score: 4238.6  bits: 793.8 E(85289):    0
Smith-Waterman score: 3336; 99.8% identity (99.8% similar) in 505 aa overlap (1-505:1-505)

               10        20        30        40        50        60
pF1KSD MGRVVAELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MGRVVAELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VKIDLFEREEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VKIDLFEREEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YNGETLVFEESNWFIINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVE
       :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
NP_057 YNGETLVFEESNWFIINVIKLVWRYGFQSLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQSTDINAFVGAVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQSTDINAFVGAVSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SCSDSGLWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SCSDSGLWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TETRSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TETRSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PIDKFGLNTVLTTDNSDLFINSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PIDKFGLNTVLTTDNSDLFINSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LFLSYDYAVKKPWLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LFLSYDYAVKKPWLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALL
              430       440       450       460       470       480

              490       500     
pF1KSD AYHRWNGHTDMIDQDGLYEKLKTEL
       :::::::::::::::::::::::::
NP_057 AYHRWNGHTDMIDQDGLYEKLKTEL
              490       500     

>>NP_000231 (OMIM: 300615,309850) amine oxidase [flavin-  (527 aa)
 initn:  75 init1:  51 opt: 144  Z-score: 180.2  bits: 42.9 E(85289): 0.0027
Smith-Waterman score: 144; 33.7% identity (65.3% similar) in 95 aa overlap (37-128:16-108)

         10        20        30        40        50        60      
pF1KSD ELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKDVKIDLF
                                     ...::.::.: :::  : . .: .: . : 
NP_000                MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTE-YGVSVLV-LE
                              10        20        30         40    

         70        80         90       100       110         120   
pF1KSD EREEVGGRLATMMVQGQEY-EAGGSVIHPLNLHMKRFVKDLGLSA--VQASGGLLGIYNG
        :..::::  :.  .  .: ..::. . : . .. :. :.::. .  :..:  :.   .:
NP_000 ARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQNRILRLSKELGIETYKVNVSERLVQYVKG
            50        60        70        80        90       100   

           130       140       150       160       170       180   
pF1KSD ETLVFEESNWFIINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLL
       .:  :                                                       
NP_000 KTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPWEAQHADKWDKMTMKELIDK
           110       120       130       140       150       160   

>>NP_000889 (OMIM: 309860) amine oxidase [flavin-contain  (520 aa)
 initn:  87 init1:  61 opt: 140  Z-score: 175.2  bits: 42.0 E(85289): 0.0051
Smith-Waterman score: 140; 34.2% identity (69.6% similar) in 79 aa overlap (37-114:7-83)

         10        20        30        40        50        60      
pF1KSD ELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKDVKIDLF
                                     ....:.::.: .::  :... : .: . : 
NP_000                         MSNKCDVVVVGGGISGMAAAKLLHDS-GLNVVV-LE
                                       10        20         30     

         70        80         90       100       110       120     
pF1KSD EREEVGGRLATMMVQGQEY-EAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGIYNGET
        :..::::  :.  :  .: . ::: . : . .. :..:.::: . ...           
NP_000 ARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKG
           40        50        60        70        80        90    

         130       140       150       160       170       180     
pF1KSD LVFEESNWFIINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHA
                                                                   
NP_000 KSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDK
          100       110       120       130       140       150    




505 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:10:49 2016 done: Thu Nov  3 04:10:51 2016
 Total Scan time:  9.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]