FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0908, 505 aa
  1>>>pF1KSDA0908 505 - 505 aa - 505 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1570+/-0.000953; mu= 18.5482+/- 0.057
 mean_var=60.1942+/-12.137, 0's: 0 Z-trim(104.0): 29  B-trim: 0 in 0/49
 Lambda= 0.165309
 statistics sampled from 7689 (7705) to 7689 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.237), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS1902.1 PCYOX1 gene_id:51449|Hs108|chr2         ( 505) 3336 804.4       0
CCDS4296.1 PCYOX1L gene_id:78991|Hs108|chr5        ( 494) 1355 331.9 9.7e-91


>>CCDS1902.1 PCYOX1 gene_id:51449|Hs108|chr2              (505 aa)
 initn: 3336 init1: 3336 opt: 3336  Z-score: 4295.8  bits: 804.4 E(32554):    0
Smith-Waterman score: 3336; 99.8% identity (99.8% similar) in 505 aa overlap (1-505:1-505)

               10        20        30        40        50        60
pF1KSD MGRVVAELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MGRVVAELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VKIDLFEREEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VKIDLFEREEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YNGETLVFEESNWFIINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVE
       :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
CCDS19 YNGETLVFEESNWFIINVIKLVWRYGFQSLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQSTDINAFVGAVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQSTDINAFVGAVSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SCSDSGLWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SCSDSGLWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TETRSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TETRSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PIDKFGLNTVLTTDNSDLFINSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PIDKFGLNTVLTTDNSDLFINSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LFLSYDYAVKKPWLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LFLSYDYAVKKPWLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALL
              430       440       450       460       470       480

              490       500     
pF1KSD AYHRWNGHTDMIDQDGLYEKLKTEL
       :::::::::::::::::::::::::
CCDS19 AYHRWNGHTDMIDQDGLYEKLKTEL
              490       500     

>>CCDS4296.1 PCYOX1L gene_id:78991|Hs108|chr5             (494 aa)
 initn: 1271 init1: 876 opt: 1355  Z-score: 1742.6  bits: 331.9 E(32554): 9.7e-91
Smith-Waterman score: 1355; 44.2% identity (74.9% similar) in 482 aa overlap (32-505:24-494)

              10        20        30        40        50        60 
pF1KSD GRVVAELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKDV
                                     ::: :::..::::::...:..:.:.::  :
CCDS42        MARAAPLLAALTALLAAAAAGGDAPPGKIAVVGAGIGGSAVAHFLQQHFGPRV
                      10        20        30        40        50   

              70        80        90       100       110       120 
pF1KSD KIDLFEREEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGIY
       .::..:.  :::::::. :. :.::.:.. .: :.:::. ::: :::   .   :  .:.
CCDS42 QIDVYEKGTVGGRLATISVNKQHYESGAASFHSLSLHMQDFVKLLGLRHRREVVGRSAIF
            60        70        80        90       100       110   

             130       140       150       160       170       180 
pF1KSD NGETLVFEESNWFIINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVEK
       .:: ...::..:...:...: :.::..:::..::::.:..::::::.::.: ::::.::.
CCDS42 GGEHFMLEETDWYLLNLFRLWWHYGISFLRLQMWVEEVMEKFMRIYKYQAHGYAFSGVEE
           120       130       140       150       160       170   

             190       200       210       220       230       240 
pF1KSD LLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQSTDINAFVGAVSLS
       ::..:: . :..: .... :.: ..: ...:...... :.:..::::. . ::.::.::.
CCDS42 LLYSLGESTFVNMTQHSVAESLLQVGVTQRFIDDVVSAVLRASYGQSAAMPAFAGAMSLA
           180       190       200       210       220       230   

             250       260       270       280       290       300 
pF1KSD CSDSGLWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIGT
        ....::.:::::::::::::. .:.:.: ..:  .     : .. .   .:.:.:.  .
CCDS42 GAQGSLWSVEGGNKLVCSGLLKLTKANVIHATVTSV-----TLHSTEGKALYQVAYENEV
           240       250       260            270       280        

             310         320       330       340       350         
pF1KSD ETRSDFYDIVLVATPL--NRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSS
        . :::::::..::::  . . ::.:: .: :::.. .  .:  :..::.: ::.: :. 
CCDS42 GNSSDFYDIVVIATPLHLDNSSSNLTFAGFHPPIDDVQGSFQPTVVSLVHGYLNSSYFGF
      290       300       310       320       330       340        

     360       370            380       390       400       410    
pF1KSD RPIDKFGLNTVLTTDNSDLF-----INSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLT
            : . ..::::  ..:     :  ..:  : :.:.  : .     ::.. : . : 
CCDS42 PDPKLFPFANILTTDFPSFFCTLDNICPVNISASFRRKQPQEAA-----VWRVQSPKPLF
      350       360       370       380       390            400   

          420       430        440       450       460       470   
pF1KSD KAQILKLFLSYDYAVKKP-WLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIA
       ..:.  :: :: :.:.   : :.: :      : . :::.:.:::..: :::..:. :.:
CCDS42 RTQLKTLFRSY-YSVQTAEWQAHPLYGSRPTLPRFALHDQLFYLNALEWAASSVEVMAVA
           410        420       430       440       450       460  

           480       490       500     
pF1KSD AHNAALLAYHRWNGHTDMIDQDGLYEKLKTEL
       :.:.:::::.::    : :::  :..:.::::
CCDS42 AKNVALLAYNRWYQDLDKIDQKDLMHKVKTEL
            470       480       490    




505 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:10:49 2016 done: Thu Nov  3 04:10:49 2016
 Total Scan time:  3.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]