Result of FASTA (omim) for
pF1KSDA0888
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0888, 670 aa
1>>>pF1KSDA0888 670 - 670 aa - 670 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9963+/-0.000481; mu= 2.1382+/- 0.030
mean_var=195.1969+/-39.804, 0's: 0 Z-trim(115.4): 26 B-trim: 1283 in 1/54
Lambda= 0.091799
statistics sampled from 25888 (25912) to 25888 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.304), width: 16
Scan time: 10.400
The best scores are: opt bits E(85289)
XP_005248537 (OMIM: 615769) PREDICTED: soluble lam ( 670) 4359 590.6 6.3e-168
XP_011541608 (OMIM: 615769) PREDICTED: soluble lam ( 670) 4359 590.6 6.3e-168
NP_056381 (OMIM: 615769) soluble lamin-associated ( 670) 4359 590.6 6.3e-168
XP_011541609 (OMIM: 615769) PREDICTED: soluble lam ( 670) 4359 590.6 6.3e-168
XP_016864822 (OMIM: 615769) PREDICTED: soluble lam ( 584) 3273 446.7 1.1e-124
XP_016864821 (OMIM: 615769) PREDICTED: soluble lam ( 646) 3273 446.8 1.2e-124
>>XP_005248537 (OMIM: 615769) PREDICTED: soluble lamin-a (670 aa)
initn: 4359 init1: 4359 opt: 4359 Z-score: 3135.8 bits: 590.6 E(85289): 6.3e-168
Smith-Waterman score: 4359; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)
10 20 30 40 50 60
pF1KSD MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
610 620 630 640 650 660
670
pF1KSD GPAKKKAKLT
::::::::::
XP_005 GPAKKKAKLT
670
>>XP_011541608 (OMIM: 615769) PREDICTED: soluble lamin-a (670 aa)
initn: 4359 init1: 4359 opt: 4359 Z-score: 3135.8 bits: 590.6 E(85289): 6.3e-168
Smith-Waterman score: 4359; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)
10 20 30 40 50 60
pF1KSD MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
610 620 630 640 650 660
670
pF1KSD GPAKKKAKLT
::::::::::
XP_011 GPAKKKAKLT
670
>>NP_056381 (OMIM: 615769) soluble lamin-associated prot (670 aa)
initn: 4359 init1: 4359 opt: 4359 Z-score: 3135.8 bits: 590.6 E(85289): 6.3e-168
Smith-Waterman score: 4359; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)
10 20 30 40 50 60
pF1KSD MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
610 620 630 640 650 660
670
pF1KSD GPAKKKAKLT
::::::::::
NP_056 GPAKKKAKLT
670
>>XP_011541609 (OMIM: 615769) PREDICTED: soluble lamin-a (670 aa)
initn: 4359 init1: 4359 opt: 4359 Z-score: 3135.8 bits: 590.6 E(85289): 6.3e-168
Smith-Waterman score: 4359; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)
10 20 30 40 50 60
pF1KSD MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
610 620 630 640 650 660
670
pF1KSD GPAKKKAKLT
::::::::::
XP_011 GPAKKKAKLT
670
>>XP_016864822 (OMIM: 615769) PREDICTED: soluble lamin-a (584 aa)
initn: 3273 init1: 3273 opt: 3273 Z-score: 2359.4 bits: 446.7 E(85289): 1.1e-124
Smith-Waterman score: 3609; 87.2% identity (87.2% similar) in 670 aa overlap (1-670:1-584)
10 20 30 40 50 60
pF1KSD MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
:::::::::::::::::
XP_016 DQTQKILALFAPEDSLT-------------------------------------------
70
130 140 150 160 170 180
pF1KSD RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
:::::::::::::::::
XP_016 -------------------------------------------GSICASFLTQSYQLPVL
80 90
190 200 210 220 230 240
pF1KSD DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
100 110 120 130 140 150
250 260 270 280 290 300
pF1KSD EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
160 170 180 190 200 210
310 320 330 340 350 360
pF1KSD MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
220 230 240 250 260 270
370 380 390 400 410 420
pF1KSD SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
280 290 300 310 320 330
430 440 450 460 470 480
pF1KSD ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
340 350 360 370 380 390
490 500 510 520 530 540
pF1KSD PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
400 410 420 430 440 450
550 560 570 580 590 600
pF1KSD GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
460 470 480 490 500 510
610 620 630 640 650 660
pF1KSD FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
520 530 540 550 560 570
670
pF1KSD GPAKKKAKLT
::::::::::
XP_016 GPAKKKAKLT
580
>>XP_016864821 (OMIM: 615769) PREDICTED: soluble lamin-a (646 aa)
initn: 3273 init1: 3273 opt: 3273 Z-score: 2358.8 bits: 446.8 E(85289): 1.2e-124
Smith-Waterman score: 3609; 87.2% identity (87.2% similar) in 670 aa overlap (1-670:63-646)
10 20 30
pF1KSD MAFPVDMLENCSHEELENSAEDYMSDLRCG
::::::::::::::::::::::::::::::
XP_016 WPRPLWVNFRRAYAGLENSTGLCEQNPAKRMAFPVDMLENCSHEELENSAEDYMSDLRCG
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD DPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFAPEDSLTAVALYLADQWWAI
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFAPEDSLT-------------
100 110 120 130
100 110 120 130 140 150
pF1KSD DDIVKTSVPSREGLKQVSTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWK
XP_016 ------------------------------------------------------------
160 170 180 190 200 210
pF1KSD KGEAIGFYSVKPTGSICASFLTQSYQLPVLDTMFLRKKYRGKDFGLHMLEDFVDSFTEDA
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -------------GSICASFLTQSYQLPVLDTMFLRKKYRGKDFGLHMLEDFVDSFTEDA
140 150 160 170 180
220 230 240 250 260 270
pF1KSD LGLRYPLSSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKILALSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGLRYPLSSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKILALSQ
190 200 210 220 230 240
280 290 300 310 320 330
pF1KSD NEPKRPMSGEYGPASVPEYEARTEDNQSSEMQLTIDSLKDAFASTSEGHDKTSVSTHTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEPKRPMSGEYGPASVPEYEARTEDNQSSEMQLTIDSLKDAFASTSEGHDKTSVSTHTRS
250 260 270 280 290 300
340 350 360 370 380 390
pF1KSD GNLKRPKIGKRFQDSEFSSSQGEDEKTSQTSLTASINKLESTARPSESSEEFLEEEPEQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNLKRPKIGKRFQDSEFSSSQGEDEKTSQTSLTASINKLESTARPSESSEEFLEEEPEQR
310 320 330 340 350 360
400 410 420 430 440 450
pF1KSD GIEFEDESSDRDARPALETQPQQEKQDGEKESELEPMNGEIMDDSLKTSLITEEEDSTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIEFEDESSDRDARPALETQPQQEKQDGEKESELEPMNGEIMDDSLKTSLITEEEDSTSE
370 380 390 400 410 420
460 470 480 490 500 510
pF1KSD VLDEELKLQPFNSSEDSTNLVPLVVESSKPPEVDAPDKTPRIPDSEMLMDEGTSDEKGHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLDEELKLQPFNSSEDSTNLVPLVVESSKPPEVDAPDKTPRIPDSEMLMDEGTSDEKGHM
430 440 450 460 470 480
520 530 540 550 560 570
pF1KSD EEKLSLLPRKKAHLGSSDNVATMSNEERSDGGFPNSVIAEFSEEPVSENLSPNTTSSLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEKLSLLPRKKAHLGSSDNVATMSNEERSDGGFPNSVIAEFSEEPVSENLSPNTTSSLED
490 500 510 520 530 540
580 590 600 610 620 630
pF1KSD QGEEGVSEPQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGEEGVSEPQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAE
550 560 570 580 590 600
640 650 660 670
pF1KSD KAVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT
::::::::::::::::::::::::::::::::::::::::
XP_016 KAVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT
610 620 630 640
670 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:59:26 2016 done: Thu Nov 3 03:59:27 2016
Total Scan time: 10.400 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]