FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0888, 670 aa
  1>>>pF1KSDA0888 670 - 670 aa - 670 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8428+/-0.00115; mu= 2.7366+/- 0.069
 mean_var=167.0476+/-33.594, 0's: 0 Z-trim(107.9): 33  B-trim: 414 in 1/50
 Lambda= 0.099233
 statistics sampled from 9828 (9850) to 9828 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.303), width:  16
 Scan time:  4.140

The best scores are:                                      opt bits E(32554)
CCDS43330.1 FAM169A gene_id:26049|Hs108|chr5       ( 670) 4359 636.7 3.1e-182


>>CCDS43330.1 FAM169A gene_id:26049|Hs108|chr5            (670 aa)
 initn: 4359 init1: 4359 opt: 4359  Z-score: 3385.3  bits: 636.7 E(32554): 3.1e-182
Smith-Waterman score: 4359; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)

               10        20        30        40        50        60
pF1KSD MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DTMFLRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLSSLMYTACKQYFEKYPGDHELLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGEYGPASVPEYEARTEDNQSSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSSQGEDEKTSQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PEVDAPDKTPRIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRRKAKGHK
              610       620       630       640       650       660

              670
pF1KSD GPAKKKAKLT
       ::::::::::
CCDS43 GPAKKKAKLT
              670




670 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:59:25 2016 done: Thu Nov  3 03:59:26 2016
 Total Scan time:  4.140 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]