Result of FASTA (omim) for
pF1KSDA0885
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0885, 798 aa
1>>>pF1KSDA0885 798 - 798 aa - 798 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4676+/-0.00043; mu= 19.5419+/- 0.027
mean_var=65.0452+/-13.260, 0's: 0 Z-trim(109.4): 22 B-trim: 1238 in 2/54
Lambda= 0.159025
statistics sampled from 17518 (17537) to 17518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.555), E-opt: 0.2 (0.206), width: 16
Scan time: 11.290
The best scores are: opt bits E(85289)
NP_001007554 (OMIM: 191510) cold shock domain-cont ( 798) 5300 1225.5 0
NP_001229821 (OMIM: 191510) cold shock domain-cont ( 798) 5300 1225.5 0
NP_001229820 (OMIM: 191510) cold shock domain-cont ( 844) 5300 1225.5 0
NP_009089 (OMIM: 191510) cold shock domain-contain ( 767) 4395 1017.8 0
NP_001229822 (OMIM: 191510) cold shock domain-cont ( 767) 4395 1017.8 0
NP_001123995 (OMIM: 191510) cold shock domain-cont ( 813) 4395 1017.9 0
>>NP_001007554 (OMIM: 191510) cold shock domain-containi (798 aa)
initn: 5300 init1: 5300 opt: 5300 Z-score: 6564.4 bits: 1225.5 E(85289): 0
Smith-Waterman score: 5300; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:1-798)
10 20 30 40 50 60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
730 740 750 760 770 780
790
pF1KSD NSMGFGAERKIRQAGVID
::::::::::::::::::
NP_001 NSMGFGAERKIRQAGVID
790
>>NP_001229821 (OMIM: 191510) cold shock domain-containi (798 aa)
initn: 5300 init1: 5300 opt: 5300 Z-score: 6564.4 bits: 1225.5 E(85289): 0
Smith-Waterman score: 5300; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:1-798)
10 20 30 40 50 60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
730 740 750 760 770 780
790
pF1KSD NSMGFGAERKIRQAGVID
::::::::::::::::::
NP_001 NSMGFGAERKIRQAGVID
790
>>NP_001229820 (OMIM: 191510) cold shock domain-containi (844 aa)
initn: 5300 init1: 5300 opt: 5300 Z-score: 6564.0 bits: 1225.5 E(85289): 0
Smith-Waterman score: 5300; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:47-844)
10 20 30
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVI
::::::::::::::::::::::::::::::
NP_001 APPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPNGTSAALRETGVI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KSD KQEILPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQEILPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNV
140 150 160 170 180 190
160 170 180 190 200 210
pF1KSD QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
200 210 220 230 240 250
220 230 240 250 260 270
pF1KSD FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
260 270 280 290 300 310
280 290 300 310 320 330
pF1KSD IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
320 330 340 350 360 370
340 350 360 370 380 390
pF1KSD ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
380 390 400 410 420 430
400 410 420 430 440 450
pF1KSD VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
440 450 460 470 480 490
460 470 480 490 500 510
pF1KSD EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
500 510 520 530 540 550
520 530 540 550 560 570
pF1KSD GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
560 570 580 590 600 610
580 590 600 610 620 630
pF1KSD GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
620 630 640 650 660 670
640 650 660 670 680 690
pF1KSD VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
680 690 700 710 720 730
700 710 720 730 740 750
pF1KSD EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
740 750 760 770 780 790
760 770 780 790
pF1KSD DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
800 810 820 830 840
>>NP_009089 (OMIM: 191510) cold shock domain-containing (767 aa)
initn: 4391 init1: 4391 opt: 4395 Z-score: 5442.5 bits: 1017.8 E(85289): 0
Smith-Waterman score: 5009; 96.1% identity (96.1% similar) in 798 aa overlap (1-798:1-767)
10 20 30 40 50 60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
:::::::::::::::::::::::::::::::::::::::::::
NP_009 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQ-----------------
70 80 90 100
130 140 150 160 170 180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
::::::::::::::::::::::::::::::::::::::::::::::
NP_009 --------------EVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
110 120 130 140
190 200 210 220 230 240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
150 160 170 180 190 200
250 260 270 280 290 300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
210 220 230 240 250 260
310 320 330 340 350 360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
270 280 290 300 310 320
370 380 390 400 410 420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
330 340 350 360 370 380
430 440 450 460 470 480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
390 400 410 420 430 440
490 500 510 520 530 540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
450 460 470 480 490 500
550 560 570 580 590 600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
510 520 530 540 550 560
610 620 630 640 650 660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
570 580 590 600 610 620
670 680 690 700 710 720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
630 640 650 660 670 680
730 740 750 760 770 780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
690 700 710 720 730 740
790
pF1KSD NSMGFGAERKIRQAGVID
::::::::::::::::::
NP_009 NSMGFGAERKIRQAGVID
750 760
>>NP_001229822 (OMIM: 191510) cold shock domain-containi (767 aa)
initn: 4391 init1: 4391 opt: 4395 Z-score: 5442.5 bits: 1017.8 E(85289): 0
Smith-Waterman score: 5009; 96.1% identity (96.1% similar) in 798 aa overlap (1-798:1-767)
10 20 30 40 50 60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
:::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQ-----------------
70 80 90 100
130 140 150 160 170 180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------------EVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
110 120 130 140
190 200 210 220 230 240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
150 160 170 180 190 200
250 260 270 280 290 300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
210 220 230 240 250 260
310 320 330 340 350 360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
270 280 290 300 310 320
370 380 390 400 410 420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
330 340 350 360 370 380
430 440 450 460 470 480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
390 400 410 420 430 440
490 500 510 520 530 540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
450 460 470 480 490 500
550 560 570 580 590 600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
510 520 530 540 550 560
610 620 630 640 650 660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
570 580 590 600 610 620
670 680 690 700 710 720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
630 640 650 660 670 680
730 740 750 760 770 780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
690 700 710 720 730 740
790
pF1KSD NSMGFGAERKIRQAGVID
::::::::::::::::::
NP_001 NSMGFGAERKIRQAGVID
750 760
>>NP_001123995 (OMIM: 191510) cold shock domain-containi (813 aa)
initn: 4391 init1: 4391 opt: 4395 Z-score: 5442.1 bits: 1017.9 E(85289): 0
Smith-Waterman score: 5009; 96.1% identity (96.1% similar) in 798 aa overlap (1-798:47-813)
10 20 30
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVI
::::::::::::::::::::::::::::::
NP_001 APPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPNGTSAALRETGVI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KSD KQEILPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNV
::::::::::::: ::::::::::::::::
NP_001 KQEILPEERMNGQ-------------------------------EVFYLTYTPEDVEGNV
140 150 160
160 170 180 190 200 210
pF1KSD QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
170 180 190 200 210 220
220 230 240 250 260 270
pF1KSD FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
230 240 250 260 270 280
280 290 300 310 320 330
pF1KSD IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
290 300 310 320 330 340
340 350 360 370 380 390
pF1KSD ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
350 360 370 380 390 400
400 410 420 430 440 450
pF1KSD VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
410 420 430 440 450 460
460 470 480 490 500 510
pF1KSD EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
470 480 490 500 510 520
520 530 540 550 560 570
pF1KSD GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
530 540 550 560 570 580
580 590 600 610 620 630
pF1KSD GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
590 600 610 620 630 640
640 650 660 670 680 690
pF1KSD VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
650 660 670 680 690 700
700 710 720 730 740 750
pF1KSD EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
710 720 730 740 750 760
760 770 780 790
pF1KSD DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
770 780 790 800 810
798 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:57:18 2016 done: Thu Nov 3 03:57:19 2016
Total Scan time: 11.290 Total Display time: 0.160
Function used was FASTA [36.3.4 Apr, 2011]