Result of FASTA (ccds) for
pF1KSDA0859
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0859, 699 aa
1>>>pF1KSDA0859 699 - 699 aa - 699 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8482+/-0.000854; mu= 16.7982+/- 0.051
mean_var=68.8375+/-13.559, 0's: 0 Z-trim(106.5): 21 B-trim: 0 in 0/50
Lambda= 0.154583
statistics sampled from 8988 (8998) to 8988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.276), width: 16
Scan time: 3.680
The best scores are: opt bits E(32554)
CCDS1299.1 METTL13 gene_id:51603|Hs108|chr1 ( 699) 4678 1052.6 0
CCDS1300.1 METTL13 gene_id:51603|Hs108|chr1 ( 613) 4094 922.3 0
CCDS30936.1 METTL13 gene_id:51603|Hs108|chr1 ( 543) 2630 595.8 5.5e-170
CCDS3255.1 ECE2 gene_id:9718|Hs108|chr3 ( 255) 413 101.3 1.9e-21
CCDS3256.2 ECE2 gene_id:9718|Hs108|chr3 ( 883) 367 91.2 7.2e-18
>>CCDS1299.1 METTL13 gene_id:51603|Hs108|chr1 (699 aa)
initn: 4678 init1: 4678 opt: 4678 Z-score: 5631.9 bits: 1052.6 E(32554): 0
Smith-Waterman score: 4678; 100.0% identity (100.0% similar) in 699 aa overlap (1-699:1-699)
10 20 30 40 50 60
pF1KSD MNLLPKSSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNLLPKSSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFELCAQEQRKPVRLESAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFELCAQEQRKPVRLESAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RLAEAVQERQQYAWLCSQLRRKARLGSVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLAEAVQERQQYAWLCSQLRRKARLGSVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD AIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSARVME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSARVME
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD NVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD LALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKL
610 620 630 640 650 660
670 680 690
pF1KSD ATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTVKIV
:::::::::::::::::::::::::::::::::::::::
CCDS12 ATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTVKIV
670 680 690
>>CCDS1300.1 METTL13 gene_id:51603|Hs108|chr1 (613 aa)
initn: 4094 init1: 4094 opt: 4094 Z-score: 4928.9 bits: 922.3 E(32554): 0
Smith-Waterman score: 4094; 100.0% identity (100.0% similar) in 613 aa overlap (87-699:1-613)
60 70 80 90 100 110
pF1KSD CGNSELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQ
::::::::::::::::::::::::::::::
CCDS13 MKECNATRRPQMSFLKMDMTQMEFPDASFQ
10 20 30
120 130 140 150 160 170
pF1KSD VVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSR
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD EGWMVRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFELCAQEQRKPVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGWMVRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFELCAQEQRKPVRL
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD ESAERLAEAVQERQQYAWLCSQLRRKARLGSVSLDLCDGDTGEPRYTLHVVDSPTVKPSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESAERLAEAVQERQQYAWLCSQLRRKARLGSVSLDLCDGDTGEPRYTLHVVDSPTVKPSR
160 170 180 190 200 210
300 310 320 330 340 350
pF1KSD DNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSA
220 230 240 250 260 270
360 370 380 390 400 410
pF1KSD RVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIF
280 290 300 310 320 330
420 430 440 450 460 470
pF1KSD LSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKA
340 350 360 370 380 390
480 490 500 510 520 530
pF1KSD MIAGLALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MIAGLALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQW
400 410 420 430 440 450
540 550 560 570 580 590
pF1KSD FGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQS
460 470 480 490 500 510
600 610 620 630 640 650
pF1KSD FLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHP
520 530 540 550 560 570
660 670 680 690
pF1KSD EQKLATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTVKIV
:::::::::::::::::::::::::::::::::::::::::::
CCDS13 EQKLATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTVKIV
580 590 600 610
>>CCDS30936.1 METTL13 gene_id:51603|Hs108|chr1 (543 aa)
initn: 2628 init1: 2628 opt: 2630 Z-score: 3165.3 bits: 595.8 E(32554): 5.5e-170
Smith-Waterman score: 3303; 77.7% identity (77.7% similar) in 699 aa overlap (1-699:1-543)
10 20 30 40 50 60
pF1KSD MNLLPKSSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MNLLPKSSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWM
:::::::::::::::::::::::::::::::
CCDS30 KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQ-----------------------------
130 140 150
190 200 210 220 230 240
pF1KSD VRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFELCAQEQRKPVRLESAE
CCDS30 ------------------------------------------------------------
250 260 270 280 290 300
pF1KSD RLAEAVQERQQYAWLCSQLRRKARLGSVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHF
CCDS30 ------------------------------------------------------------
310 320 330 340 350 360
pF1KSD AIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSARVME
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 -------GRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSARVME
160 170 180 190 200
370 380 390 400 410 420
pF1KSD LAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNR
210 220 230 240 250 260
430 440 450 460 470 480
pF1KSD NVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAG
270 280 290 300 310 320
490 500 510 520 530 540
pF1KSD LALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFS
330 340 350 360 370 380
550 560 570 580 590 600
pF1KSD QSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQK
390 400 410 420 430 440
610 620 630 640 650 660
pF1KSD VKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKL
450 460 470 480 490 500
670 680 690
pF1KSD ATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTVKIV
:::::::::::::::::::::::::::::::::::::::
CCDS30 ATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTVKIV
510 520 530 540
>>CCDS3255.1 ECE2 gene_id:9718|Hs108|chr3 (255 aa)
initn: 350 init1: 141 opt: 413 Z-score: 498.5 bits: 101.3 E(32554): 1.9e-21
Smith-Waterman score: 413; 34.6% identity (69.7% similar) in 188 aa overlap (4-182:13-196)
10 20 30 40 50
pF1KSD MNLLPKSSREFGSVDYWEKFFQQRGKKA-FEWYGTYLELCGVLHKYIKPRE
::. . . :.::.. .: . .: ..:.: . . ..:. ..:..
CCDS32 MASPGAGRAPPELPERNCGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD KVLVIGCGNSELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEF
..::.::::: :: .:. :. .....: : ::. :. .: . ::. . ::. ...:
CCDS32 RILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQARHA-HVPQLRWETMDVRKLDF
70 80 90 100 110
120 130 140 150 160
pF1KSD PDASFQVVLDKGTLDAVLTDEEE------KTLQQVDRMLAEVGRVLQVGGRYLCISLAQA
:.:::.:::.::::::.:. :.. . .. ::..:.::.::: :::.. .. :
CCDS32 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD HILKKAVGHFSRE--GWMVRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQI
:. . :... :: .:
CCDS32 HFRTR---HYAQAYYGWSLRHATYGSGFHFHLYLMHKGGKLSVAQLALGAQILSPPRPPT
180 190 200 210 220 230
>>CCDS3256.2 ECE2 gene_id:9718|Hs108|chr3 (883 aa)
initn: 279 init1: 141 opt: 367 Z-score: 434.3 bits: 91.2 E(32554): 7.2e-18
Smith-Waterman score: 367; 35.1% identity (70.2% similar) in 171 aa overlap (4-167:13-180)
10 20 30 40 50
pF1KSD MNLLPKSSREFGSVDYWEKFFQQRGKKA-FEWYGTYLELCGVLHKYIKPRE
::. . . :.::.. .: . .: ..:.: . . ..:. ..:..
CCDS32 MASPGAGRAPPELPERNCGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD KVLVIGCGNSELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEF
..::.::::: :: .:. :. .....: : ::. :. .: . ::. . ::. ...:
CCDS32 RILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQARHA-HVPQLRWETMDVRKLDF
70 80 90 100 110
120 130 140 150 160
pF1KSD PDASFQVVLDKGTLDAVLTDEEE------KTLQQVDRMLAEVGRVLQVGGRYLCISLAQA
:.:::.:::.::::::.:. :.. . .. ::..:.::: .: : : : : .:
CCDS32 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVG--FQKGTRQLLGSRTQL
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD HILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFE
...
CCDS32 ELVLAGASLLLAALLLGCLVALGVQYHRDPSHSTCLTEACIRVAGKILESLDRGVSPCED
180 190 200 210 220 230
699 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:48:21 2016 done: Thu Nov 3 18:48:22 2016
Total Scan time: 3.680 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]