Result of FASTA (omim) for
pF1KSDA0857
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0857, 653 aa
1>>>pF1KSDA0857 653 - 653 aa - 653 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5334+/-0.000353; mu= 4.0347+/- 0.022
mean_var=164.5343+/-33.615, 0's: 0 Z-trim(119.5): 34 B-trim: 132 in 1/54
Lambda= 0.099988
statistics sampled from 33583 (33619) to 33583 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.394), width: 16
Scan time: 10.450
The best scores are: opt bits E(85289)
NP_056285 (OMIM: 605536) rab11 family-interacting ( 653) 4276 629.1 1.5e-179
XP_011531056 (OMIM: 605536) PREDICTED: rab11 famil ( 574) 3458 511.1 4.4e-144
XP_005264308 (OMIM: 605536) PREDICTED: rab11 famil (1218) 3457 511.1 9.3e-144
XP_011531057 (OMIM: 605536) PREDICTED: rab11 famil ( 546) 3449 509.8 1e-143
XP_011531058 (OMIM: 605536) PREDICTED: rab11 famil ( 540) 3448 509.7 1.1e-143
XP_005264310 (OMIM: 605536) PREDICTED: rab11 famil ( 531) 3445 509.2 1.5e-143
XP_006712048 (OMIM: 605536) PREDICTED: rab11 famil (1249) 3451 510.3 1.7e-143
XP_005264309 (OMIM: 605536) PREDICTED: rab11 famil (1324) 3447 509.7 2.7e-143
XP_011531055 (OMIM: 605536) PREDICTED: rab11 famil (1118) 2493 372.1 6.3e-102
XP_016859277 (OMIM: 605536) PREDICTED: rab11 famil (1073) 2281 341.5 9.7e-93
NP_079427 (OMIM: 608737) rab11 family-interacting ( 649) 658 107.2 1.9e-22
XP_016869358 (OMIM: 608737) PREDICTED: rab11 famil (1175) 658 107.4 3.1e-22
NP_001002814 (OMIM: 608737) rab11 family-interacti (1283) 658 107.4 3.4e-22
XP_016871415 (OMIM: 608599) PREDICTED: rab11 famil ( 433) 473 80.5 1.4e-14
NP_055719 (OMIM: 608599) rab11 family-interacting ( 512) 473 80.5 1.7e-14
NP_001317096 (OMIM: 608599) rab11 family-interacti ( 532) 473 80.5 1.7e-14
>>NP_056285 (OMIM: 605536) rab11 family-interacting prot (653 aa)
initn: 4276 init1: 4276 opt: 4276 Z-score: 3344.6 bits: 629.1 E(85289): 1.5e-179
Smith-Waterman score: 4276; 100.0% identity (100.0% similar) in 653 aa overlap (1-653:1-653)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLSAAPVEGSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLSAAPVEGSPD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD RKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHL
550 560 570 580 590 600
610 620 630 640 650
pF1KSD THDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQIPPGPPK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 THDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQIPPGPPK
610 620 630 640 650
>>XP_011531056 (OMIM: 605536) PREDICTED: rab11 family-in (574 aa)
initn: 3479 init1: 3444 opt: 3458 Z-score: 2707.7 bits: 511.1 E(85289): 4.4e-144
Smith-Waterman score: 3458; 98.7% identity (98.9% similar) in 534 aa overlap (1-530:1-534)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520 530
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPS----PHPVKPLSAAPVE
::::::::::::::::::::::::::::::::::::::::::: :.: ::
XP_011 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSLDVSPQPPPPLLPLLPL
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD GSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAK
XP_011 PPPPPPLKPPHLDYWVLPTRSSPLCRATPSSRSS
550 560 570
>>XP_005264308 (OMIM: 605536) PREDICTED: rab11 family-in (1218 aa)
initn: 3444 init1: 3444 opt: 3457 Z-score: 2701.9 bits: 511.1 E(85289): 9.3e-144
Smith-Waterman score: 3459; 90.9% identity (93.2% similar) in 591 aa overlap (1-575:1-591)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520 530
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLS-AAPVEGSP
::::::::::::::::::::::::::::::::::::::::::: ..: :.: .. :
XP_005 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSASRASPTPLASPGKALP
490 500 510 520 530 540
540 550 560 570 580
pF1KSD D-------------RKQSRSSLSIALSSGLEK--LKTVTSGSIQPVTQAPQAGQMVDTKR
. : ..:: . . ::: :. :.. . ::
XP_005 EWDNTFNVFAASRLRPEARSEILAPAGVGLEAAGLQDPGPGAMTAKAAEPQGEPGGGGGG
550 560 570 580 590 600
590 600 610 620 630 640
pF1KSD LKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTL
XP_005 GGGGGGRGGSSVWLEPRVPLDLGPNHQSASAADPGLLGSVGAGLPSSSAQLQLRASGSEP
610 620 630 640 650 660
>--
initn: 977 init1: 858 opt: 858 Z-score: 675.7 bits: 136.2 E(85289): 6.7e-31
Smith-Waterman score: 866; 53.9% identity (66.1% similar) in 345 aa overlap (335-653:904-1218)
310 320 330 340 350
pF1KSD TYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYN-----EEPQGP-VRHRSSI
:: ....::.. : :..: .. .. .
XP_005 EDASPPVSGPCLSAPASCPEGPAPIPCHSKSLALQSQHIWGTPEVGEGPEAPEAQGQDPV
880 890 900 910 920 930
360 370 380 390 400
pF1KSD S---GSLPSSGSLQA---VSSR-----FSEEG---PRSTDDTWPRGSRSNSSSEAVLGQE
. ::: :. : :: ::.. : .: : : ... : ::: .: : :
XP_005 GEGLGSL-SATSQQADVWVSKEDALNPFLFQGSRDPPSLSSASPPGSRESSIHS---GPE
940 950 960 970 980
410 420 430 440 450
pF1KSD ELSAQAKV------LAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEER
:: . . : : ::: ..:. : .:.. : :...:: .:
XP_005 ELPTPPEPDFPPPPLPPWASH---HRGGPSPPCSPLSEAWPLTTSSAPPGE---------
990 1000 1010 1020 1030
460 470 480 490 500 510
pF1KSD KPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDP
: .:. :. : . : : . ::: : : :..:
XP_005 -P--ALLPGPHE--PSPPGGSPALLREDLAAATPASPLVLLPLET---------RPAEEP
1040 1050 1060 1070 1080
520 530 540 550 560 570
pF1KSD TQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QPSASPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
1090 1100 1110 1120 1130 1140
580 590 600 610 620 630
pF1KSD MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
1150 1160 1170 1180 1190 1200
640 650
pF1KSD ETSPTLLQIPPGPPK
:::::::::::::::
XP_005 ETSPTLLQIPPGPPK
1210
>>XP_011531057 (OMIM: 605536) PREDICTED: rab11 family-in (546 aa)
initn: 3444 init1: 3444 opt: 3449 Z-score: 2701.0 bits: 509.8 E(85289): 1e-143
Smith-Waterman score: 3449; 97.6% identity (98.5% similar) in 541 aa overlap (1-539:1-535)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520 530
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLSAAP--VEGS
::::::::::::::::::::::::::::::::::::::::::: :...: .::.
XP_011 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPS------LDVSPQCLEGQ
490 500 510 520 530
540 550 560 570 580 590
pF1KSD PDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYY
:
XP_011 PHPPGLPWESPA
540
>>XP_011531058 (OMIM: 605536) PREDICTED: rab11 family-in (540 aa)
initn: 3444 init1: 3444 opt: 3448 Z-score: 2700.3 bits: 509.7 E(85289): 1.1e-143
Smith-Waterman score: 3448; 99.6% identity (99.6% similar) in 526 aa overlap (1-526:1-526)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLSAAPVEGSPD
::::::::::::::::::::::::::::::::::::::::::: :
XP_011 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSRLPRCCHCCRCRHHRRP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD RKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHL
>>XP_005264310 (OMIM: 605536) PREDICTED: rab11 family-in (531 aa)
initn: 3479 init1: 3445 opt: 3445 Z-score: 2698.1 bits: 509.2 E(85289): 1.5e-143
Smith-Waterman score: 3445; 99.4% identity (99.4% similar) in 526 aa overlap (1-526:1-526)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLSAAPVEGSPD
:::::::::::::::::::::::::::::::::::::::::: :
XP_005 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPRATPSSRSS
490 500 510 520 530
550 560 570 580 590 600
pF1KSD RKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHL
>>XP_006712048 (OMIM: 605536) PREDICTED: rab11 family-in (1249 aa)
initn: 3444 init1: 3444 opt: 3451 Z-score: 2697.1 bits: 510.3 E(85289): 1.7e-143
Smith-Waterman score: 3451; 92.2% identity (96.0% similar) in 576 aa overlap (1-576:1-569)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLSAAPVEGSPD
::::::::::::::::::::::::::::::::::::::::::: :...: ...:
XP_006 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPS------LDVSP-QSNPF
490 500 510 520 530
550 560 570 580 590 600
pF1KSD RKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHL
.. ..... : .: ... .: :... .:
XP_006 FEELIADIALNSPSPAPSLPSASRASPTPLASPGKALPEWDNTFNVFAASRLRPEARSEI
540 550 560 570 580 590
610 620 630 640 650
pF1KSD THDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQIPPGPPK
XP_006 LAPAGVGLEAAGLQDPGPGAMTAKAAEPQGEPGGGGGGGGGGGGRGGSSVWLEPRVPLDL
600 610 620 630 640 650
>--
initn: 974 init1: 858 opt: 858 Z-score: 675.6 bits: 136.2 E(85289): 6.8e-31
Smith-Waterman score: 866; 53.9% identity (66.1% similar) in 345 aa overlap (335-653:935-1249)
310 320 330 340 350
pF1KSD TYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYN-----EEPQGP-VRHRSSI
:: ....::.. : :..: .. .. .
XP_006 EDASPPVSGPCLSAPASCPEGPAPIPCHSKSLALQSQHIWGTPEVGEGPEAPEAQGQDPV
910 920 930 940 950 960
360 370 380 390 400
pF1KSD S---GSLPSSGSLQA---VSSR-----FSEEG---PRSTDDTWPRGSRSNSSSEAVLGQE
. ::: :. : :: ::.. : .: : : ... : ::: .: : :
XP_006 GEGLGSL-SATSQQADVWVSKEDALNPFLFQGSRDPPSLSSASPPGSRESSIHS---GPE
970 980 990 1000 1010 1020
410 420 430 440 450
pF1KSD ELSAQAKV------LAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEER
:: . . : : ::: ..:. : .:.. : :...:: .:
XP_006 ELPTPPEPDFPPPPLPPWASH---HRGGPSPPCSPLSEAWPLTTSSAPPGE---------
1030 1040 1050 1060
460 470 480 490 500 510
pF1KSD KPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDP
: .:. :. : . : : . ::: : : :..:
XP_006 -P--ALLPGPHE--PSPPGGSPALLREDLAAATPASPLVLLPLET---------RPAEEP
1070 1080 1090 1100 1110
520 530 540 550 560 570
pF1KSD TQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QPSASPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
1120 1130 1140 1150 1160 1170
580 590 600 610 620 630
pF1KSD MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
1180 1190 1200 1210 1220 1230
640 650
pF1KSD ETSPTLLQIPPGPPK
:::::::::::::::
XP_006 ETSPTLLQIPPGPPK
1240
>>XP_005264309 (OMIM: 605536) PREDICTED: rab11 family-in (1324 aa)
initn: 3444 init1: 3444 opt: 3447 Z-score: 2693.6 bits: 509.7 E(85289): 2.7e-143
Smith-Waterman score: 3454; 90.7% identity (92.7% similar) in 590 aa overlap (1-574:1-590)
10 20 30 40 50 60
pF1KSD MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRR
430 440 450 460 470 480
490 500 510 520
pF1KSD SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPS--------------PH-
::::::::::::::::::::::::::::::::::::::::::: ::
XP_005 SSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSLDVSPQVESDPAALPHH
490 500 510 520 530 540
530 540 550 560 570 580
pF1KSD -PVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKR
: .: . :: .: :. .: .: .... . : . :
XP_005 LPCSPWAPAPPTPAPTAAPMLSTNLFAAASPAAATAAAAATTAAPEATPPGLLGLTNPFL
550 560 570 580 590 600
590 600 610 620 630 640
pF1KSD LKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTL
XP_005 TSLQSNPFFEELIADIALNSPSPAPSLPSASRASPTPLASPGKALPEWDNTFNVFAASRL
610 620 630 640 650 660
>--
initn: 974 init1: 858 opt: 858 Z-score: 675.2 bits: 136.2 E(85289): 7.2e-31
Smith-Waterman score: 866; 53.9% identity (66.1% similar) in 345 aa overlap (335-653:1010-1324)
310 320 330 340 350
pF1KSD TYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYN-----EEPQGP-VRHRSSI
:: ....::.. : :..: .. .. .
XP_005 EDASPPVSGPCLSAPASCPEGPAPIPCHSKSLALQSQHIWGTPEVGEGPEAPEAQGQDPV
980 990 1000 1010 1020 1030
360 370 380 390 400
pF1KSD S---GSLPSSGSLQA---VSSR-----FSEEG---PRSTDDTWPRGSRSNSSSEAVLGQE
. ::: :. : :: ::.. : .: : : ... : ::: .: : :
XP_005 GEGLGSL-SATSQQADVWVSKEDALNPFLFQGSRDPPSLSSASPPGSRESSIHS---GPE
1040 1050 1060 1070 1080 1090
410 420 430 440 450
pF1KSD ELSAQAKV------LAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEER
:: . . : : ::: ..:. : .:.. : :...:: .:
XP_005 ELPTPPEPDFPPPPLPPWASH---HRGGPSPPCSPLSEAWPLTTSSAPPGE---------
1100 1110 1120 1130 1140
460 470 480 490 500 510
pF1KSD KPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDP
: .:. :. : . : : . ::: : : :..:
XP_005 -P--ALLPGPHE--PSPPGGSPALLREDLAAATPASPLVLLPLET---------RPAEEP
1150 1160 1170 1180
520 530 540 550 560 570
pF1KSD TQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QPSASPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
1190 1200 1210 1220 1230 1240
580 590 600 610 620 630
pF1KSD MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
1250 1260 1270 1280 1290 1300
640 650
pF1KSD ETSPTLLQIPPGPPK
:::::::::::::::
XP_005 ETSPTLLQIPPGPPK
1310 1320
>>XP_011531055 (OMIM: 605536) PREDICTED: rab11 family-in (1118 aa)
initn: 2514 init1: 2486 opt: 2493 Z-score: 1951.0 bits: 372.1 E(85289): 6.3e-102
Smith-Waterman score: 2493; 89.4% identity (94.7% similar) in 433 aa overlap (144-576:13-438)
120 130 140 150 160 170
pF1KSD HRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERGEIEVTIQFTRNNL
.:::::::::::::::::::::::::::::
XP_011 MSLVQTQMKAGFRWYKLHSKPGKKEKERGEIEVTIQFTRNNL
10 20 30 40
180 190 200 210 220 230
pF1KSD SASMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SASMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKG
50 60 70 80 90 100
240 250 260 270 280 290
pF1KSD FFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDS
110 120 130 140 150 160
300 310 320 330 340 350
pF1KSD AQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVR
170 180 190 200 210 220
360 370 380 390 400 410
pF1KSD HRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVL
230 240 250 260 270 280
420 430 440 450 460 470
pF1KSD APGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLS
290 300 310 320 330 340
480 490 500 510 520 530
pF1KSD RSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPSPHPVKPLSAA
:::::::::::::::::::::::::::::::::::::::::::::::::: :...
XP_011 RSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPS------LDVS
350 360 370 380 390
540 550 560 570 580 590
pF1KSD PVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQMVDTKRLKDSAVLDQ
: ...: .. ..... : .: ... .: :... .:
XP_011 P-QSNPFFEELIADIALNSPSPAPSLPSASRASPTPLASPGKALPEWDNTFNVFAASRLR
400 410 420 430 440 450
600 610 620 630 640 650
pF1KSD SAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIMETSPTLLQIPPGPPK
XP_011 PEARSEILAPAGVGLEAAGLQDPGPGAMTAKAAEPQGEPGGGGGGGGGGGGRGGSSVWLE
460 470 480 490 500 510
>--
initn: 974 init1: 858 opt: 858 Z-score: 676.3 bits: 136.2 E(85289): 6.2e-31
Smith-Waterman score: 866; 53.9% identity (66.1% similar) in 345 aa overlap (335-653:804-1118)
310 320 330 340 350
pF1KSD TYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYN-----EEPQGP-VRHRSSI
:: ....::.. : :..: .. .. .
XP_011 EDASPPVSGPCLSAPASCPEGPAPIPCHSKSLALQSQHIWGTPEVGEGPEAPEAQGQDPV
780 790 800 810 820 830
360 370 380 390 400
pF1KSD S---GSLPSSGSLQA---VSSR-----FSEEG---PRSTDDTWPRGSRSNSSSEAVLGQE
. ::: :. : :: ::.. : .: : : ... : ::: .: : :
XP_011 GEGLGSL-SATSQQADVWVSKEDALNPFLFQGSRDPPSLSSASPPGSRESSIHS---GPE
840 850 860 870 880
410 420 430 440 450
pF1KSD ELSAQAKV------LAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEER
:: . . : : ::: ..:. : .:.. : :...:: .:
XP_011 ELPTPPEPDFPPPPLPPWASH---HRGGPSPPCSPLSEAWPLTTSSAPPGE---------
890 900 910 920 930
460 470 480 490 500 510
pF1KSD KPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDP
: .:. :. : . : : . ::: : : :..:
XP_011 -P--ALLPGPHE--PSPPGGSPALLREDLAAATPASPLVLLPLET---------RPAEEP
940 950 960 970 980
520 530 540 550 560 570
pF1KSD TQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QPSASPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
990 1000 1010 1020 1030 1040
580 590 600 610 620 630
pF1KSD MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
1050 1060 1070 1080 1090 1100
640 650
pF1KSD ETSPTLLQIPPGPPK
:::::::::::::::
XP_011 ETSPTLLQIPPGPPK
1110
>>XP_016859277 (OMIM: 605536) PREDICTED: rab11 family-in (1073 aa)
initn: 2302 init1: 2274 opt: 2281 Z-score: 1786.0 bits: 341.5 E(85289): 9.7e-93
Smith-Waterman score: 2281; 88.8% identity (94.2% similar) in 400 aa overlap (177-576:1-393)
150 160 170 180 190 200
pF1KSD KLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDLSMKDKPRSPFSKIRDKMKGKKKYDLE
::::::::::::::::::::::::::::::
XP_016 MFDLSMKDKPRSPFSKIRDKMKGKKKYDLE
10 20 30
210 220 230 240 250 260
pF1KSD SASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLA
40 50 60 70 80 90
270 280 290 300 310 320
pF1KSD YQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQG
100 110 120 130 140 150
330 340 350 360 370 380
pF1KSD HLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDT
160 170 180 190 200 210
390 400 410 420 430 440
pF1KSD WPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEA
220 230 240 250 260 270
450 460 470 480 490 500
pF1KSD VAEKEGARKEERKPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAEKEGARKEERKPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAK
280 290 300 310 320 330
510 520 530 540 550 560
pF1KSD SSWFGLREAKDPTQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGS
::::::::::::::::: :...: ...: .. ..... : .: ... .:
XP_016 SSWFGLREAKDPTQKPS------LDVSP-QSNPFFEELIADIALNSPSPAPSLPSASRAS
340 350 360 370 380
570 580 590 600 610 620
pF1KSD IQPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQEL
:... .:
XP_016 PTPLASPGKALPEWDNTFNVFAASRLRPEARSEILAPAGVGLEAAGLQDPGPGAMTAKAA
390 400 410 420 430 440
>--
initn: 974 init1: 858 opt: 858 Z-score: 676.6 bits: 136.2 E(85289): 6e-31
Smith-Waterman score: 866; 53.9% identity (66.1% similar) in 345 aa overlap (335-653:759-1073)
310 320 330 340 350
pF1KSD TYSDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYN-----EEPQGP-VRHRSSI
:: ....::.. : :..: .. .. .
XP_016 EDASPPVSGPCLSAPASCPEGPAPIPCHSKSLALQSQHIWGTPEVGEGPEAPEAQGQDPV
730 740 750 760 770 780
360 370 380 390 400
pF1KSD S---GSLPSSGSLQA---VSSR-----FSEEG---PRSTDDTWPRGSRSNSSSEAVLGQE
. ::: :. : :: ::.. : .: : : ... : ::: .: : :
XP_016 GEGLGSL-SATSQQADVWVSKEDALNPFLFQGSRDPPSLSSASPPGSRESSIHS---GPE
790 800 810 820 830 840
410 420 430 440 450
pF1KSD ELSAQAKV------LAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKEGARKEER
:: . . : : ::: ..:. : .:.. : :...:: .:
XP_016 ELPTPPEPDFPPPPLPPWASH---HRGGPSPPCSPLSEAWPLTTSSAPPGE---------
850 860 870 880 890
460 470 480 490 500 510
pF1KSD KPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLREAKDP
: .:. :. : . : : . ::: : : :..:
XP_016 -P--ALLPGPHE--PSPPGGSPALLREDLAAATPASPLVLLPLET---------RPAEEP
900 910 920 930
520 530 540 550 560 570
pF1KSD TQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPSASPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSIQPVTQAPQAGQ
940 950 960 970 980 990
580 590 600 610 620 630
pF1KSD MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELESYIDRLLVRIM
1000 1010 1020 1030 1040 1050
640 650
pF1KSD ETSPTLLQIPPGPPK
:::::::::::::::
XP_016 ETSPTLLQIPPGPPK
1060 1070
653 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:47:55 2016 done: Thu Nov 3 03:47:57 2016
Total Scan time: 10.450 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]