Result of FASTA (ccds) for
pF1KSDA0849
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0849, 953 aa
1>>>pF1KSDA0849 953 - 953 aa - 953 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6093+/-0.000924; mu= 9.8776+/- 0.056
mean_var=107.1158+/-21.747, 0's: 0 Z-trim(108.6): 21 B-trim: 562 in 1/50
Lambda= 0.123922
statistics sampled from 10322 (10337) to 10322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.318), width: 16
Scan time: 4.420
The best scores are: opt bits E(32554)
CCDS42164.1 CYLD gene_id:1540|Hs108|chr16 ( 953) 6486 1170.8 0
CCDS45482.1 CYLD gene_id:1540|Hs108|chr16 ( 956) 6470 1167.9 0
>>CCDS42164.1 CYLD gene_id:1540|Hs108|chr16 (953 aa)
initn: 6486 init1: 6486 opt: 6486 Z-score: 6265.8 bits: 1170.8 E(32554): 0
Smith-Waterman score: 6486; 100.0% identity (100.0% similar) in 953 aa overlap (1-953:1-953)
10 20 30 40 50 60
pF1KSD MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DIIPESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DIIPESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD DSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD TKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKENPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKENPP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD FYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD RFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD DSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD KVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLED
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD TPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKD
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNI
850 860 870 880 890 900
910 920 930 940 950
pF1KSD PQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
910 920 930 940 950
>>CCDS45482.1 CYLD gene_id:1540|Hs108|chr16 (956 aa)
initn: 4452 init1: 4452 opt: 6470 Z-score: 6250.3 bits: 1167.9 E(32554): 0
Smith-Waterman score: 6470; 99.7% identity (99.7% similar) in 956 aa overlap (1-953:1-956)
10 20 30 40 50 60
pF1KSD MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
250 260 270 280 290 300
310 320 330 340 350
pF1KSD DIIP---ESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNG
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DIIPALSESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD SSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD FSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKE
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD PDSRFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PDSRFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNS
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD CYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIM
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD KLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFME
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD KNEKVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KNEKVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDL
730 740 750 760 770 780
780 790 800 810 820 830
pF1KSD LEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSL
790 800 810 820 830 840
840 850 860 870 880 890
pF1KSD PKDLPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PKDLPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNG
850 860 870 880 890 900
900 910 920 930 940 950
pF1KSD FNIPQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FNIPQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
910 920 930 940 950
953 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:47:01 2016 done: Thu Nov 3 18:47:01 2016
Total Scan time: 4.420 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]