FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0844, 407 aa
  1>>>pF1KSDA0844 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4308+/-0.000979; mu= 2.9671+/- 0.058
 mean_var=168.2953+/-34.284, 0's: 0 Z-trim(110.0): 15  B-trim: 15 in 1/50
 Lambda= 0.098864
 statistics sampled from 11312 (11317) to 11312 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS31209.1 ZNF365 gene_id:22891|Hs108|chr10       ( 407) 2660 391.4 7.9e-109
CCDS41531.1 ZNF365 gene_id:22891|Hs108|chr10       ( 333) 1974 293.6 1.9e-79
CCDS7264.1 ZNF365 gene_id:22891|Hs108|chr10        ( 462) 1974 293.6 2.5e-79


>>CCDS31209.1 ZNF365 gene_id:22891|Hs108|chr10            (407 aa)
 initn: 2660 init1: 2660 opt: 2660  Z-score: 2067.3  bits: 391.4 E(32554): 7.9e-109
Smith-Waterman score: 2660; 99.8% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KSD MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKSHFHPKGRNHLKKAKDDRASMQPA
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS31 VRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPA
              310       320       330       340       350       360

              370       380       390       400       
pF1KSD KAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII
              370       380       390       400       

>>CCDS41531.1 ZNF365 gene_id:22891|Hs108|chr10            (333 aa)
 initn: 1974 init1: 1974 opt: 1974  Z-score: 1539.8  bits: 293.6 E(32554): 1.9e-79
Smith-Waterman score: 1974; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KSD MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKSHFHPKGRNHLKKAKDDRASMQPA
       ::::::::                                                    
CCDS41 VRDLSGHVSWKGAGEARLVCQNDLELEESAIVE                           
              310       320       330                              

>>CCDS7264.1 ZNF365 gene_id:22891|Hs108|chr10             (462 aa)
 initn: 1974 init1: 1974 opt: 1974  Z-score: 1537.7  bits: 293.6 E(32554): 2.5e-79
Smith-Waterman score: 1976; 90.3% identity (93.8% similar) in 352 aa overlap (1-352:1-341)

               10        20        30        40        50        60
pF1KSD MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKSHFHPKGRNHLKKAKDDRASMQPA
       ::::::::     : .     . :. . ::.. ::. ..  .  .::.  ::        
CCDS72 VRDLSGHV-----SWK-----GAGEARLVCQN-DLELEIFGHINHHLSGLKDSHCLVFLQ
                   310            320        330       340         

              370       380       390       400                    
pF1KSD KAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII             
                                                                   
CCDS72 APPVPWIILASFLWILGNPWTSSTATAGFSQIWVLFPFCGGTFHHNEKDVLGLQDFERES
     350       360       370       380       390       400         




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:42:01 2016 done: Thu Nov  3 03:42:01 2016
 Total Scan time:  2.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]