FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0831, 379 aa
  1>>>pF1KSDA0831 379 - 379 aa - 379 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4002+/-0.000347; mu= 12.5928+/- 0.022
 mean_var=99.3717+/-19.805, 0's: 0 Z-trim(117.0): 4  B-trim: 867 in 1/57
 Lambda= 0.128660
 statistics sampled from 28682 (28685) to 28682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.336), width:  16
 Scan time:  9.130

The best scores are:                                      opt bits E(85289)
XP_011534865 (OMIM: 613515) PREDICTED: beclin 1-as ( 379) 2496 473.4 3.7e-133
NP_055739 (OMIM: 613515) beclin 1-associated autop ( 492) 2496 473.5 4.6e-133


>>XP_011534865 (OMIM: 613515) PREDICTED: beclin 1-associ  (379 aa)
 initn: 2496 init1: 2496 opt: 2496  Z-score: 2511.6  bits: 473.4 E(85289): 3.7e-133
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KSD MSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSST
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VSKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD MEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD NILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGM
              310       320       330       340       350       360

              370         
pF1KSD ISSAAASVTSWFKAYTGHR
       :::::::::::::::::::
XP_011 ISSAAASVTSWFKAYTGHR
              370         

>>NP_055739 (OMIM: 613515) beclin 1-associated autophagy  (492 aa)
 initn: 2496 init1: 2496 opt: 2496  Z-score: 2509.9  bits: 473.5 E(85289): 4.6e-133
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:114-492)

                                             10        20        30
pF1KSD                               MSCKMRIEQLKQTICKGNEEMEKNSEGLLK
                                     ::::::::::::::::::::::::::::::
NP_055 RLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRIEQLKQTICKGNEEMEKNSEGLLK
            90       100       110       120       130       140   

               40        50        60        70        80        90
pF1KSD TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS
           150       160       170       180       190       200   

              100       110       120       130       140       150
pF1KSD VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI
           210       220       230       240       250       260   

              160       170       180       190       200       210
pF1KSD TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV
           270       280       290       300       310       320   

              220       230       240       250       260       270
pF1KSD NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS
           330       340       350       360       370       380   

              280       290       300       310       320       330
pF1KSD PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF
           390       400       410       420       430       440   

              340       350       360       370         
pF1KSD CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR
           450       460       470       480       490  




379 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:37:22 2016 done: Thu Nov  3 03:37:24 2016
 Total Scan time:  9.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]