Result of FASTA (omim) for
pF1KSDA0785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0785, 694 aa
1>>>pF1KSDA0785 694 - 694 aa - 694 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6640+/-0.000389; mu= 18.3222+/- 0.024
mean_var=73.8795+/-14.700, 0's: 0 Z-trim(112.5): 35 B-trim: 186 in 1/51
Lambda= 0.149215
statistics sampled from 21466 (21501) to 21466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.252), width: 16
Scan time: 7.950
The best scores are: opt bits E(85289)
NP_001164607 (OMIM: 300178) zinc finger BED domain ( 694) 4609 1002.0 0
NP_004720 (OMIM: 300178) zinc finger BED domain-co ( 694) 4609 1002.0 0
NP_001164606 (OMIM: 300178) zinc finger BED domain ( 694) 4609 1002.0 0
NP_055653 (OMIM: 612552) zinc finger BED domain-co (1171) 503 118.2 1.8e-25
NP_001167579 (OMIM: 613512) zinc finger BED domain ( 979) 188 50.3 4.1e-05
>>NP_001164607 (OMIM: 300178) zinc finger BED domain-con (694 aa)
initn: 4609 init1: 4609 opt: 4609 Z-score: 5358.5 bits: 1002.0 E(85289): 0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)
10 20 30 40 50 60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
610 620 630 640 650 660
670 680 690
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
::::::::::::::::::::::::::::::::::
NP_001 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
670 680 690
>>NP_004720 (OMIM: 300178) zinc finger BED domain-contai (694 aa)
initn: 4609 init1: 4609 opt: 4609 Z-score: 5358.5 bits: 1002.0 E(85289): 0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)
10 20 30 40 50 60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
610 620 630 640 650 660
670 680 690
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
::::::::::::::::::::::::::::::::::
NP_004 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
670 680 690
>>NP_001164606 (OMIM: 300178) zinc finger BED domain-con (694 aa)
initn: 4609 init1: 4609 opt: 4609 Z-score: 5358.5 bits: 1002.0 E(85289): 0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)
10 20 30 40 50 60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
610 620 630 640 650 660
670 680 690
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
::::::::::::::::::::::::::::::::::
NP_001 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
670 680 690
>>NP_055653 (OMIM: 612552) zinc finger BED domain-contai (1171 aa)
initn: 402 init1: 136 opt: 503 Z-score: 578.1 bits: 118.2 E(85289): 1.8e-25
Smith-Waterman score: 556; 25.0% identity (56.6% similar) in 647 aa overlap (20-650:558-1163)
10 20 30 40
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRI
. ::.:..:.. : . :. :
NP_055 LASAESSSSKLTDLPTVVTKNNQVMFPVNSKKTSKLWNHFSI------CSADSTKVVCLH
530 540 550 560 570 580
50 60 70 80 90 100
pF1KSD CMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDA
: :. . . .::. : ..: : . :: . : .. . :.... : ..
NP_055 CGRTISRGKKPTNLGTSCLLRHLQRFHSNVLK-TEVSETARPSSPDTRVPRGTELSGASS
590 600 610 620 630 640
110 120 130 140 150 160
pF1KSD LAVKAGHGYDSKK-QQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYI
. . :::. ...:. . .: : : :.::. :. ::. :.: ::. .:.
NP_055 FDDTNEKFYDSHPVAKKITSLIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYF
650 660 670 680 690 700
170 180 190 200 210 220
pF1KSD STKAIPEKYGAVREVILKELAEATWCGI---STDMWRSENQNRAYVTLAAHFLGLGAPN-
: ::: : :...:...: :: :. .. .: : ::.: :.::.::.... .:
NP_055 SRTAIPGMYDNVKQIIMSHLKEAE-SGVIHFTSGIWMS-NQTREYLTLTAHWVSFESPAR
710 720 730 740 750
230 240 250 260 270 280
pF1KSD --CLSMG-SRCLKTFEVPEENTAETITRVLYEVFIEWGISAKV-FGATTNYGKDIVKACS
: . : : . .: . ....: . : . : :. . : :.. . .: :.
NP_055 PRCDDHHCSALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT--
760 770 780 790 800 810
290 300 310 320 330
pF1KSD LLDVAVH--MPCLGHTFNAGIQQAFQLPKL-GALLSRCRKLVEYFQQSAVAMYMLYEKQK
:. . : . :..:: : ...:.. .. ::: ::. : ..: : : : :.
NP_055 -LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQR
820 830 840 850 860 870
340 350 360 370 380 390
pF1KSD QQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGL
. . . :... : :.... ::.:: ::. .: . :: : . .. ..: .....
NP_055 EYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE--CNFRELISCDQWEVMQSV
880 890 900 910 920 930
400 410 420 430 440 450
pF1KSD VELLQPFKQVAEMLSASRYPTISMVKPLLHML-LNTTLNIKET---DSKELSMAKEVIAK
. :.::. ... .: ... :.:.: :..:.: .. . ..:: :. :. ::....
NP_055 CRALKPFEAASREMS-TQMSTLSQVIPMVHILNRKVEMLFEETMGIDTMLRSL-KEAMVS
940 950 960 970 980 990
460 470 480 490 500 510
pF1KSD ELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGY
.:: : .. :. .: ::.:::::: ... : .: .. ...: . :.....
NP_055 RLSATLHD-PRY-VF---ATLLDPRYKA-SLFTEEEAEQYKQDLIRELE-LMNSTS----
1000 1010 1020 1030 1040
520 530 540 550 560 570
pF1KSD RPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEELS
:. ... ...: :. .. : . .. . .:. .:
NP_055 -----------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMVLA--
1050 1060 1070 1080
580 590 600 610 620 630
pF1KSD NFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSAKR
. ..:: . ::: .:. . : .: : . .. . : :.::.. .. : .
NP_055 -YLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSLGQ
1090 1100 1110 1120 1130 1140
640 650 660 670 680 690
pF1KSD NRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSF
.:: : .. .:: :
NP_055 SRLMMEHFEKLIFLKVNLPLIYFQY
1150 1160 1170
>>NP_001167579 (OMIM: 613512) zinc finger BED domain-con (979 aa)
initn: 180 init1: 81 opt: 188 Z-score: 212.8 bits: 50.3 E(85289): 4.1e-05
Smith-Waterman score: 390; 22.1% identity (56.2% similar) in 552 aa overlap (126-653:410-950)
100 110 120 130 140 150
pF1KSD KLKPESSQQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKT
.. :.. .: : ..: . . :.:. ...
NP_001 ESPIPVAEQGTLMRAQERETTCCGNPVSSHISQAIIQMIVEDMHPYNYFSTPAFQRFMQI
380 390 400 410 420 430
160 170 180 190 200 210
pF1KSD ADPRYELPSRKYISTKAIPEKYGAVREVILKEL--AEATWCGISTDMWRSENQNRAYVTL
. : :.:::. :. :::.:. : ::: :. : ... ...:.: ... . : .
NP_001 VAPDYRLPSETYFFTKAVPQLYDCVREKIFLTLENVQSQKIHLTVDIW-THDPSTDYFIV
440 450 460 470 480 490
220 230 240 250 260
pF1KSD AAHFLGLGAPNCLSMGS----RCLKTFEVPEENTAETITRVLYEVFIEWGI--SAKVFGA
..:...: . . :. : : .. : :: .: :. . :. : . .
NP_001 TVHWVSLETASFLNNGRIPDFRKWAVLCVTGLAKDCLITNILQELNDQIGLWLSPNFLIP
500 510 520 530 540 550
270 280 290 300 310 320
pF1KSD T---TNYGKDIVKACSLLDVA-VHMPCLGHTFNAGIQQAFQLPK-LGALLSRCRKLVEYF
. .. ....:.: . : . .:.::. : .: ::. : : . .: :: ..:
NP_001 SFIVSDNSSNVVHA--IKDGGFTHVPCFLHCLNMVIQDFFCEHKSIENMLVAARKTCHHF
560 570 580 590 600 610
330 340 350 360 370 380
pF1KSD QQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNH
..:. : .: : :..... : ..... : ::. ::. : :. . . : . :.
NP_001 SHSVKARQILQEFQNDHQLPWKNLKQDETGHWISTFYMLKWLLEHCYSVHHSLGRASG--
620 630 640 650 660 670
390 400 410 420 430 440
pF1KSD HLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTISMVKPLLHMLLNTTLNIKET-DS
..: . .:. . . ..:.::..... .:. . ...: ::.: :: . ...: .
NP_001 -VVLTSLQWTLMTYVCDILKPFEEATQKVSV-KTAGLNQVLPLIHHLLLSLQKLREDFQV
680 690 700 710 720 730
450 460 470 480 490
pF1KSD KELSMAKEVIAKELSKTYQETPEIDMFLN----VATFLDPRYKR-LP--FLSAFERQQVE
. ...: ... . : .: :. . .::.::: .: : : .. . . .
NP_001 RGITQALNLVDSLSLKLETDTLLSAMLKSKPCILATLLDPCFKNSLEDFFPQGADLETYK
740 750 760 770 780 790
500 510 520 530 540 550
pF1KSD NRVVEEAKGLLDKVKDGGYRPAEDKIFP---VPEEPPVKKLMRTSTPPPASVINNMLAEI
. ..::. . ... . :. . : : . ...: . .: .:: .. . ..
NP_001 QFLAEEVCNYMESSPEICQIPTSEASCPSVTVGADSFTSSL-KEGTSSSGSVDSSAVDNV
800 810 820 830 840 850
560 570 580 590 600 610
pF1KSD FCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCV
:. . . ::.: . : .. : ..::: .:. .....: : .: .:
NP_001 --ALGSKSFMFPSAVAVVDEYFKEKYSEFSG-GDDPLIYWQRKISIWPALTQVAIQYLSC
860 870 880 890 900
620 630 640 650 660 670
pF1KSD TATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQ
: .: . .. . : .... .:: : ..
NP_001 PMCSWQSECIFTKNSHFHPKQIMSLDFDNIEQLMFLKMNLKNVNYDYSTLVLSWDPEQNE
910 920 930 940 950 960
680 690
pF1KSD EQVFSLGDGVSGGFFGIRDSSFL
NP_001 VVQSSEKEILP
970
694 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:09:49 2016 done: Thu Nov 3 03:09:50 2016
Total Scan time: 7.950 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]